RNA–Protein interactions for RNA: YBL103C

RTG3, Transcript of bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways, yeast

Gene RTG3, Length 1,461 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTG3	YBL103C	NPA3	P47122	385 aa		4.91	□□□□□ -1.62
RTG3	YBL103C	MPD2	Q99316	277 aa		4.91	□□□□□ -1.62
RTG3	YBL103C	SEC18	P18759	758 aa	Known RBP	4.9	□□□□□ -1.62
RTG3	YBL103C	PDE1	P22434	369 aa		4.9	□□□□□ -1.62
RTG3	YBL103C	AIM17	P23180	465 aa	Known RBP	4.9	□□□□□ -1.62
RTG3	YBL103C	STB2	P46679	850 aa		4.9	□□□□□ -1.62
RTG3	YBL103C	LYS20	P48570	428 aa	Known RBP	4.9	□□□□□ -1.62
RTG3	YBL103C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.62	not detected
RTG3	YBL103C	NIC96	P34077	839 aa		4.89	□□□□□ -1.63
RTG3	YBL103C	ORC5	P50874	479 aa		4.89	□□□□□ -1.63
RTG3	YBL103C	YBR255C-A	Q3E776	120 aa		4.89	□□□□□ -1.63
RTG3	YBL103C	SCO2	P38072	301 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	GND1	P38720	489 aa	Known RBP	4.88	□□□□□ -1.63
RTG3	YBL103C	YIR016W	P40572	265 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	LSC1	P53598	329 aa	Known RBP	4.88	□□□□□ -1.63
RTG3	YBL103C	SNA4	Q07549	140 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	LEA1	Q08963	238 aa	Predicted RBP	4.88	□□□□□ -1.63
RTG3	YBL103C	ATX2	Q12067	313 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	COX1	P00401	534 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	FRD1	P32614	470 aa	Known RBP	4.88	□□□□□ -1.63
RTG3	YBL103C	STT3	P39007	718 aa	Known RBP	4.88	□□□□□ -1.63
RTG3	YBL103C	YJL107C	P42947	387 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	MDV1	P47025	714 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	YOL114C	Q12322	202 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	RRI1	Q12468	440 aa		4.88	□□□□□ -1.63
RTG3	YBL103C	SWC3	P31376	625 aa		4.87	□□□□□ -1.63
RTG3	YBL103C	ATO2	P32907	282 aa		4.87	□□□□□ -1.63
RTG3	YBL103C	YPR003C	P53394	754 aa		4.87	□□□□□ -1.63
RTG3	YBL103C	ECM22	Q05958	814 aa	Predicted RBP	4.87	□□□□□ -1.63
RTG3	YBL103C	CNA1	P23287	553 aa		4.86	□□□□□ -1.63
RTG3	YBL103C	TOM71	P38825	639 aa	Known RBP	4.86	□□□□□ -1.63
RTG3	YBL103C	THI3	Q07471	609 aa		4.86	□□□□□ -1.63
RTG3	YBL103C	LAC1	P28496	418 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	MSS51	P32335	436 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	ARN1	P38731	627 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	FUN12	P39730	1002 aa	Known RBP	4.85	□□□□□ -1.63
RTG3	YBL103C	CAB2	P40506	365 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	YPT11	P48559	417 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	PEX8	P53248	589 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	YGR079W	P53249	370 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	VTC3	Q02725	835 aa		4.85	□□□□□ -1.63
RTG3	YBL103C	SIR1	P21691	654 aa		4.84	□□□□□ -1.63
RTG3	YBL103C	YPL108W	Q02872	168 aa	Predicted RBP	4.84	□□□□□ -1.63
RTG3	YBL103C	NUP53	Q03790	475 aa		4.84	□□□□□ -1.63
RTG3	YBL103C	SRL1	Q08673	210 aa		4.84	□□□□□ -1.63
RTG3	YBL103C	HES1	P35843	434 aa		4.83	□□□□□ -1.64
RTG3	YBL103C	CDC1	P40986	491 aa		4.83	□□□□□ -1.64
RTG3	YBL103C	YNL144C	P53907	740 aa		4.83	□□□□□ -1.64
RTG3	YBL103C	TEP1	P53916	434 aa		4.83	□□□□□ -1.64
RTG3	YBL103C	BOP3	P53958	396 aa		4.83	□□□□□ -1.64
RTG3	YBL103C	MOT3	P54785	490 aa	Known RBP	4.83	□□□□□ -1.64
RTG3	YBL103C	BUD7	Q08754	746 aa		4.83	□□□□□ -1.64
RTG3	YBL103C	UBX3	Q12229	455 aa		4.83	□□□□□ -1.64
RTG3	YBL103C	TMA7	Q3E764	64 aa	Known RBP	4.83	□□□□□ -1.64
RTG3	YBL103C	ADE3	P07245	946 aa	Known RBP	4.82	□□□□□ -1.64
RTG3	YBL103C	SST2	P11972	698 aa	Known RBP	4.82	□□□□□ -1.64
RTG3	YBL103C	POL3	P15436	1097 aa		4.82	□□□□□ -1.64
RTG3	YBL103C	RIT1	P23796	513 aa		4.82	□□□□□ -1.64
RTG3	YBL103C	SWI4	P25302	1093 aa	Known RBP	4.82	□□□□□ -1.64
RTG3	YBL103C	UBX6	P47049	396 aa		4.82	□□□□□ -1.64
RTG3	YBL103C	TAM41	P53230	385 aa		4.82	□□□□□ -1.64
RTG3	YBL103C	PDR8	Q06149	701 aa		4.82	□□□□□ -1.64
RTG3	YBL103C	RVB2	Q12464	471 aa	Known RBP	4.82	□□□□□ -1.64
RTG3	YBL103C	URK1	P27515	501 aa		4.81	□□□□□ -1.64
RTG3	YBL103C	YDR109C	Q04585	715 aa		4.81	□□□□□ -1.64
RTG3	YBL103C	SUL2	Q12325	893 aa		4.81	□□□□□ -1.64
RTG3	YBL103C	APM3	P38153	483 aa		4.81	□□□□□ -1.64
RTG3	YBL103C	YIL152W	P40455	235 aa		4.81	□□□□□ -1.64
RTG3	YBL103C	ATG21	Q02887	496 aa		4.81	□□□□□ -1.64
RTG3	YBL103C	YRB30	P53107	440 aa	Predicted RBP	4.8	□□□□□ -1.64
RTG3	YBL103C	YMR034C	Q05131	434 aa	Predicted RBP	4.8	□□□□□ -1.64
RTG3	YBL103C	IWR1	Q07532	353 aa	Predicted RBP	4.8	□□□□□ -1.64
RTG3	YBL103C	DSE3	Q08729	430 aa		4.8	□□□□□ -1.64
RTG3	YBL103C	YCR043C	P25361	127 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	GCS1	P35197	352 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	OCT1	P35999	772 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	VPS41	P38959	992 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	QRI7	P43122	407 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	GTB1	Q04924	702 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	HIM1	Q06674	414 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	GSH2	Q08220	491 aa		4.79	□□□□□ -1.64
RTG3	YBL103C	RPL42A	P0CX27	106 aa	Known RBP	4.78	□□□□□ -1.64
RTG3	YBL103C	RPL42B	P0CX28	106 aa	Known RBP	4.78	□□□□□ -1.64
RTG3	YBL103C	PET122	P10355	254 aa		4.78	□□□□□ -1.64
RTG3	YBL103C	MCM3	P24279	971 aa	Known RBP	4.78	□□□□□ -1.64
RTG3	YBL103C	YKL133C	P36066	463 aa		4.78	□□□□□ -1.64
RTG3	YBL103C	TPA1	P40032	644 aa	Known RBP	4.78	□□□□□ -1.64
RTG3	YBL103C	YGL036W	P53185	909 aa	Predicted RBP	4.78	□□□□□ -1.64
RTG3	YBL103C	MET14	Q02196	202 aa		4.78	□□□□□ -1.64
RTG3	YBL103C	EIS1	Q05050	843 aa	Known RBP	4.78	□□□□□ -1.64
RTG3	YBL103C	BRE1	Q07457	700 aa	Known RBP	4.78	□□□□□ -1.64
RTG3	YBL103C	YCR006C	P25350	157 aa		4.77	□□□□□ -1.65
RTG3	YBL103C	ARP2	P32381	391 aa	Known RBP	4.77	□□□□□ -1.65
RTG3	YBL103C	ARC40	P38328	384 aa	Known RBP	4.77	□□□□□ -1.65
RTG3	YBL103C	BUD16	P39988	312 aa		4.77	□□□□□ -1.65
RTG3	YBL103C	HIS6	P40545	261 aa		4.77	□□□□□ -1.65
RTG3	YBL103C	MLH2	Q07980	695 aa		4.77	□□□□□ -1.65
RTG3	YBL103C	MCH4	Q08268	501 aa		4.77	□□□□□ -1.65
RTG3	YBL103C	NEW1	Q08972	1196 aa	Known RBP	4.77	□□□□□ -1.65
RTG3	YBL103C	GAL1	P04385	528 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 38.6 ms