RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 C19orf81C9J6K1 198 aa24.85■■□□□ 1.57
VPS28-206ENST00000526734 GLRX3O76003 335 aaKnown RBP24.85■■□□□ 1.57
VPS28-206ENST00000526734 ARMT1Q9H993 441 aa24.85■■□□□ 1.57
VPS28-206ENST00000526734 DCP1AQ9NPI6 582 aaPredicted RBP24.85■■□□□ 1.57
VPS28-206ENST00000526734 CPA4Q9UI42 421 aa24.85■■□□□ 1.57
VPS28-206ENST00000526734 NAV1Q8NEY1 1877 aa24.84■■□□□ 1.57
VPS28-206ENST00000526734 AMOTL1Q8IY63 956 aa24.84■■□□□ 1.57
VPS28-206ENST00000526734 GDF11O95390 407 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 CYP2C8P10632 490 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 BCRP11274 1271 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 HMGCS2P54868 508 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 BACE1P56817 501 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 SLC4A8Q2Y0W8 1093 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 SMCR8Q8TEV9 937 aaPredicted RBP24.83■■□□□ 1.57
VPS28-206ENST00000526734 SDR42E1Q8WUS8 393 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 TMOD4Q9NZQ9 345 aa24.83■■□□□ 1.57
VPS28-206ENST00000526734 LOC285556D6RIA3 1793 aa24.82■■□□□ 1.56
VPS28-206ENST00000526734 USP17L10C9JJH3 530 aa24.82■■□□□ 1.56
VPS28-206ENST00000526734 MX1P20591 662 aa24.82■■□□□ 1.56
VPS28-206ENST00000526734 PLCD1P51178 756 aa24.82■■□□□ 1.56
VPS28-206ENST00000526734 GABPAQ06546 454 aa24.82■■□□□ 1.56
VPS28-206ENST00000526734 CERKLQ49MI3 558 aaPredicted RBP24.82■■□□□ 1.56
VPS28-206ENST00000526734 CABP5Q9NP86 173 aa24.82■■□□□ 1.56
VPS28-206ENST00000526734 SWAP70Q9UH65 585 aa24.82■■□□□ 1.56
VPS28-206ENST00000526734 MYH7P12883 1935 aa24.81■■□□□ 1.56
VPS28-206ENST00000526734 GH2P01242 217 aa24.81■■□□□ 1.56
VPS28-206ENST00000526734 HOXD10P28358 340 aa24.81■■□□□ 1.56
VPS28-206ENST00000526734 MTMR2Q13614 643 aa24.81■■□□□ 1.56
VPS28-206ENST00000526734 APPBP2Q92624 585 aa24.81■■□□□ 1.56
VPS28-206ENST00000526734 RWDD1Q9H446 243 aaPredicted RBP24.81■■□□□ 1.56
VPS28-206ENST00000526734 OSBPP22059 807 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 SHMT1P34896 483 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 GCLCP48506 637 aaPredicted RBP24.8■■□□□ 1.56
VPS28-206ENST00000526734 JAG1P78504 1218 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 ABCB5Q2M3G0 1257 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 TREML2Q5T2D2 321 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 ANKRD45Q5TZF3 282 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 TSHZ3Q63HK5 1081 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 PI4K2BQ8TCG2 481 aa24.8■■□□□ 1.56
VPS28-206ENST00000526734 RNF113AO15541 343 aaKnown RBP24.79■■□□□ 1.56
VPS28-206ENST00000526734 ARMC5Q96C12 935 aa24.79■■□□□ 1.56
VPS28-206ENST00000526734 PUS7LQ9H0K6 701 aaKnown RBP24.79■■□□□ 1.56
VPS28-206ENST00000526734 SLC4A4Q9Y6R1 1079 aa24.79■■□□□ 1.56
VPS28-206ENST00000526734 SALL3Q9BXA9 1300 aa24.79■■□□□ 1.56
VPS28-206ENST00000526734 PSMC4P43686 418 aa24.78■■□□□ 1.56
VPS28-206ENST00000526734 FCGRTP55899 365 aa24.78■■□□□ 1.56
VPS28-206ENST00000526734 CAP1Q01518 475 aa24.78■■□□□ 1.56
VPS28-206ENST00000526734 GIMAP6Q6P9H5 292 aa24.78■■□□□ 1.56
VPS28-206ENST00000526734 PRKAB2O43741 272 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 GNAT2P19087 354 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 HOXA7P31268 230 aaPredicted RBP24.77■■□□□ 1.56
VPS28-206ENST00000526734 USP14P54578 494 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 FAM110CQ1W6H9 321 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 SLFNL1Q499Z3 407 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 USP17L2Q6R6M4 530 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 NBPF11Q86T75 865 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 ARHGAP39Q9C0H5 1083 aa24.77■■□□□ 1.56
VPS28-206ENST00000526734 ARPP21Q9UBL0 812 aaPredicted RBP24.77■■□□□ 1.56
VPS28-206ENST00000526734 FMNL1O95466 1100 aaPredicted RBP24.76■■□□□ 1.55
VPS28-206ENST00000526734 IRX3P78415 501 aaPredicted RBP24.76■■□□□ 1.55
VPS28-206ENST00000526734 MLLT1Q03111 559 aaPredicted RBP24.76■■□□□ 1.55
VPS28-206ENST00000526734 C12orf60Q5U649 245 aa24.76■■□□□ 1.55
VPS28-206ENST00000526734 OTUD7AQ8TE49 926 aaPredicted RBP24.76■■□□□ 1.55
VPS28-206ENST00000526734 TRIM47Q96LD4 638 aa24.76■■□□□ 1.55
VPS28-206ENST00000526734 C12orf42Q96LP6 360 aa24.76■■□□□ 1.55
VPS28-206ENST00000526734 STRBPQ96SI9 672 aaKnown RBP24.76■■□□□ 1.55
VPS28-206ENST00000526734 FEZ1Q99689 392 aa24.76■■□□□ 1.55
VPS28-206ENST00000526734 STAP2Q9UGK3 403 aa24.76■■□□□ 1.55
VPS28-206ENST00000526734 SRRDQ9UH36 339 aa24.76■■□□□ 1.55
VPS28-206ENST00000526734 PTCH2Q9Y6C5 1203 aa24.76■■□□□ 1.55
VPS28-206ENST00000526734 SOX10P56693 466 aa24.75■■□□□ 1.55
VPS28-206ENST00000526734 RAB3GAP1Q15042 981 aa24.75■■□□□ 1.55
VPS28-206ENST00000526734 SHROOM1Q2M3G4 852 aaPredicted RBP24.75■■□□□ 1.55
VPS28-206ENST00000526734 SLC9C1Q4G0N8 1177 aa24.75■■□□□ 1.55
VPS28-206ENST00000526734 SMC5Q8IY18 1101 aa24.75■■□□□ 1.55
VPS28-206ENST00000526734 GTF3C2Q8WUA4 911 aaPredicted RBP24.75■■□□□ 1.55
VPS28-206ENST00000526734 CCDC17Q96LX7 622 aa24.75■■□□□ 1.55
VPS28-206ENST00000526734 KIAA1683Q9H0B3 1180 aa24.75■■□□□ 1.55
VPS28-206ENST00000526734 ASCC2Q9H1I8 757 aaPredicted RBP24.75■■□□□ 1.55
VPS28-206ENST00000526734 USP17L12C9JPN9 530 aa24.74■■□□□ 1.55
VPS28-206ENST00000526734 USP17L21D6R901 530 aa24.74■■□□□ 1.55
VPS28-206ENST00000526734 CHGBP05060 677 aa24.74■■□□□ 1.55
VPS28-206ENST00000526734 TMEM179Q6ZVK1 233 aa24.74■■□□□ 1.55
VPS28-206ENST00000526734 TICAM2Q86XR7 235 aa24.74■■□□□ 1.55
VPS28-206ENST00000526734 OSBP2Q969R2 916 aa24.74■■□□□ 1.55
VPS28-206ENST00000526734 FSD1Q9BTV5 496 aa24.74■■□□□ 1.55
VPS28-206ENST00000526734 CYP2D6P10635 497 aa24.73■■□□□ 1.55
VPS28-206ENST00000526734 EXOC6Q8TAG9 804 aa24.73■■□□□ 1.55
VPS28-206ENST00000526734 SUPT16HQ9Y5B9 1047 aaKnown RBP24.73■■□□□ 1.55
VPS28-206ENST00000526734 GPAA1O43292 621 aa24.72■■□□□ 1.55
VPS28-206ENST00000526734 SBK1Q52WX2 424 aa24.72■■□□□ 1.55
VPS28-206ENST00000526734 C16orf86Q6ZW13 317 aa24.72■■□□□ 1.55
VPS28-206ENST00000526734 ANKRD13CQ8N6S4 541 aa24.72■■□□□ 1.55
VPS28-206ENST00000526734 EMILIN3Q9NT22 766 aa24.72■■□□□ 1.55
VPS28-206ENST00000526734 MORF4L1Q9UBU8 362 aa24.72■■□□□ 1.55
VPS28-206ENST00000526734 MYPNQ86TC9 1320 aa24.71■■□□□ 1.55
VPS28-206ENST00000526734 MPHOSPH10O00566 681 aaKnown RBP24.71■■□□□ 1.55
VPS28-206ENST00000526734 CTGFP29279 349 aa24.71■■□□□ 1.55
VPS28-206ENST00000526734 PDE1AP54750 535 aa24.71■■□□□ 1.55
VPS28-206ENST00000526734 CTR9Q6PD62 1173 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms