RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 SYT10Q6XYQ8 523 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 AMIGO3Q86WK7 504 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 TIGD1Q96MW7 591 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 COL14A1Q05707 1796 aaKnown RBP12.42□□□□□ -0.42
VPS52-217ENST00000478934 BCL9LQ86UU0 1499 aa12.42□□□□□ -0.42
VPS52-217ENST00000478934 A0A087X0B3 334 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 COBLO75128 1261 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 GNAT2P19087 354 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 GTF2E1P29083 439 aaPredicted RBP12.41□□□□□ -0.42
VPS52-217ENST00000478934 UBASH3AP57075 661 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 SAFBQ15424 915 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS52-217ENST00000478934 PKN1Q16512 942 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 FAM98CQ17RN3 349 aaKnown RBP12.41□□□□□ -0.42
VPS52-217ENST00000478934 TXNRD3Q86VQ6 643 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 FAM177A1Q8N128 213 aaPredicted RBP12.41□□□□□ -0.42
VPS52-217ENST00000478934 EPSTI1Q96J88 318 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 MED15Q96RN5 788 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 CSRNP2Q9H175 543 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 INTS13Q9NVM9 706 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 STK36Q9NRP7 1315 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 USP17L12C9JPN9 530 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 USP17L21D6R901 530 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 SFPQP23246 707 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS52-217ENST00000478934 CFAP100Q494V2 611 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 PPP1R13BQ96KQ4 1090 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 AATFQ9NY61 560 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS52-217ENST00000478934 MAN1B1Q9UKM7 699 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 FAM237AA0A1B0GTK4 181 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 DEXIO95424 95 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 PTPREP23469 700 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 MYL5Q02045 173 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 CTR9Q6PD62 1173 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 STAMQ92783 540 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 ZSCAN10Q96SZ4 725 aaPredicted RBP12.41□□□□□ -0.42
VPS52-217ENST00000478934 CDC5LQ99459 802 aaKnown RBP12.41□□□□□ -0.42
VPS52-217ENST00000478934 CHD4Q14839 1912 aa12.41□□□□□ -0.42
VPS52-217ENST00000478934 ZNF804BA4D1E1 1349 aa12.4□□□□□ -0.42
VPS52-217ENST00000478934 NEMFO60524 1076 aa12.4□□□□□ -0.42
VPS52-217ENST00000478934 PRDX5P30044 214 aa12.4□□□□□ -0.42
VPS52-217ENST00000478934 KMT5BQ4FZB7 885 aa12.4□□□□□ -0.42
VPS52-217ENST00000478934 ESR2Q92731 530 aa12.4□□□□□ -0.42
VPS52-217ENST00000478934 CICQ96RK0 1608 aaPredicted RBP12.4□□□□□ -0.42
VPS52-217ENST00000478934 ROBO1Q9Y6N7 1651 aa12.4□□□□□ -0.42
VPS52-217ENST00000478934 IKBKBO14920 756 aa12.4□□□□□ -0.43
VPS52-217ENST00000478934 AFMP43652 599 aa12.4□□□□□ -0.43
VPS52-217ENST00000478934 PIP4K2BP78356 416 aa12.4□□□□□ -0.43
VPS52-217ENST00000478934 FUT2Q10981 343 aa12.4□□□□□ -0.43
VPS52-217ENST00000478934 POSTNQ15063 836 aa12.4□□□□□ -0.43
VPS52-217ENST00000478934 GSDMDP57764 484 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 MECOMQ03112 1051 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 ZNF174Q15697 407 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 IFIT1BQ5T764 474 aaKnown RBP12.39□□□□□ -0.43
VPS52-217ENST00000478934 SMYD4Q8IYR2 804 aaPredicted RBP12.39□□□□□ -0.43
VPS52-217ENST00000478934 KIF18AQ8NI77 898 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 WASF1Q92558 559 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 DHX58Q96C10 678 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 FOXP1Q9H334 677 aaPredicted RBP12.39□□□□□ -0.43
VPS52-217ENST00000478934 RNF41Q9H4P4 317 aaPredicted RBP12.39□□□□□ -0.43
VPS52-217ENST00000478934 SAMSN1Q9NSI8 373 aaKnown RBP12.39□□□□□ -0.43
VPS52-217ENST00000478934 BSDC1Q9NW68 430 aaPredicted RBP12.39□□□□□ -0.43
VPS52-217ENST00000478934 DOCK2Q92608 1830 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 TPM4P67936 248 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 CAVIN4Q5BKX8 364 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 SPATA31A5Q5VU36 1347 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 OLFM4Q6UX06 510 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 HOMER1Q86YM7 354 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 SPATA31A7Q8IWB4 1347 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 ARAP2Q8WZ64 1704 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 IMPACTQ9P2X3 320 aa12.39□□□□□ -0.43
VPS52-217ENST00000478934 FANCGO15287 622 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 ERCC6LQ2NKX8 1250 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 RILPL1Q5EBL4 403 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 FBXO38Q6PIJ6 1188 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 GPR101Q96P66 508 aaPredicted RBP12.38□□□□□ -0.43
VPS52-217ENST00000478934 GNL3LQ9NVN8 582 aaKnown RBP12.38□□□□□ -0.43
VPS52-217ENST00000478934 BAZ2AQ9UIF9 1905 aaKnown RBP12.38□□□□□ -0.43
VPS52-217ENST00000478934 ACTN4O43707 911 aaKnown RBP12.38□□□□□ -0.43
VPS52-217ENST00000478934 STX17P56962 302 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 DMTNQ08495 405 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 TROAPQ12815 778 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 SRBD1Q8N5C6 995 aaKnown RBP12.38□□□□□ -0.43
VPS52-217ENST00000478934 NSUN4Q96CB9 384 aaKnown RBP12.38□□□□□ -0.43
VPS52-217ENST00000478934 ST7Q9NRC1 585 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 MTMR7Q9Y216 660 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 NFE2L3Q9Y4A8 694 aa12.38□□□□□ -0.43
VPS52-217ENST00000478934 RTL9Q8NET4 1388 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 AKAP17AQ02040 695 aaKnown RBP12.37□□□□□ -0.43
VPS52-217ENST00000478934 UBE4AQ14139 1066 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 SF3B3Q15393 1217 aaKnown RBP12.37□□□□□ -0.43
VPS52-217ENST00000478934 KLHL10Q6JEL2 608 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 DNAI1Q9UI46 699 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 ANAPC4Q9UJX5 808 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 ZNF652Q9Y2D9 606 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 SRPRBQ9Y5M8 271 aaKnown RBP12.37□□□□□ -0.43
VPS52-217ENST00000478934 BCORQ6W2J9 1755 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 PHLPP1O60346 1717 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 MYH2Q9UKX2 1941 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 CCDC196A0A1B0GTZ2 297 aa12.37□□□□□ -0.43
VPS52-217ENST00000478934 ADKP55263 362 aaKnown RBP12.37□□□□□ -0.43
VPS52-217ENST00000478934 NPY5RQ15761 445 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms