RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ST13P4Q8IZP2 240 aaPredicted RBP14.77□□□□□ -0.05
USP40-208ENST00000450966 XAB2Q9HCS7 855 aaKnown RBP14.77□□□□□ -0.05
USP40-208ENST00000450966 ZNF219Q9P2Y4 722 aaPredicted RBP14.77□□□□□ -0.05
USP40-208ENST00000450966 TMEM87AQ8NBN3 555 aa14.77□□□□□ -0.05
USP40-208ENST00000450966 SSH1Q8WYL5 1049 aa14.77□□□□□ -0.05
USP40-208ENST00000450966 SAMM50Q9Y512 469 aa14.77□□□□□ -0.05
USP40-208ENST00000450966 ACTN4O43707 911 aaKnown RBP14.76□□□□□ -0.05
USP40-208ENST00000450966 IL15P40933 162 aaPredicted RBP14.76□□□□□ -0.05
USP40-208ENST00000450966 SSRP1Q08945 709 aaKnown RBP14.76□□□□□ -0.05
USP40-208ENST00000450966 CFAP157Q5JU67 520 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 KSR2Q6VAB6 950 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 SRGAP1Q7Z6B7 1085 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 ORC3Q9UBD5 711 aaPredicted RBP14.76□□□□□ -0.05
USP40-208ENST00000450966 TSKSQ9UJT2 592 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 ATP1A2P50993 1020 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 CALCOCO2Q13137 446 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 TRIM47Q96LD4 638 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 MAST3O60307 1309 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 SMARCA5O60264 1052 aaPredicted RBP14.76□□□□□ -0.05
USP40-208ENST00000450966 UBA5Q9GZZ9 404 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 IFIT3O14879 490 aaKnown RBP14.76□□□□□ -0.05
USP40-208ENST00000450966 KRT13P13646 458 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 MIS12Q9H081 205 aa14.76□□□□□ -0.05
USP40-208ENST00000450966 PCDHB15Q9Y5E8 787 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 TRIM27P14373 513 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 MYO5CQ9NQX4 1742 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 GOLGA8AA7E2F4 631 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 GOLGA8BA8MQT2 603 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 ZWINTO95229 277 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 HOXC9P31274 260 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 HIBCHQ6NVY1 386 aaPredicted RBP14.75□□□□□ -0.05
USP40-208ENST00000450966 ECHDC1Q9NTX5 307 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.75□□□□□ -0.05
USP40-208ENST00000450966 SAMD9Q5K651 1589 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 PLEKHG1Q9ULL1 1385 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 MGEA5O60502 916 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 HOXB7P09629 217 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 CETN1Q12798 172 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 LRMPQ12912 555 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 ATG3Q9NT62 314 aa14.75□□□□□ -0.05
USP40-208ENST00000450966 AMPD3Q01432 767 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 KRT71Q3SY84 523 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 TSNARE1Q96NA8 513 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 HOMER3Q9NSC5 361 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 POLR3AO14802 1390 aaPredicted RBP14.74□□□□□ -0.05
USP40-208ENST00000450966 DISP3Q9P2K9 1392 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 EIF4A2Q14240 407 aaKnown RBP14.74□□□□□ -0.05
USP40-208ENST00000450966 APLFQ8IW19 511 aaPredicted RBP14.74□□□□□ -0.05
USP40-208ENST00000450966 CCDC8Q9H0W5 538 aaPredicted RBP14.74□□□□□ -0.05
USP40-208ENST00000450966 KDM5DQ9BY66 1539 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 IQCDQ96DY2 449 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 UTP11Q9Y3A2 253 aaKnown RBP14.74□□□□□ -0.05
USP40-208ENST00000450966 MLH3Q9UHC1 1453 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 SUN1O94901 812 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 SDSP20132 328 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 UBE3BQ7Z3V4 1068 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 FGD4Q96M96 766 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 EIF2AQ9BY44 585 aaKnown RBP14.74□□□□□ -0.05
USP40-208ENST00000450966 SNUPNO95149 360 aaKnown RBP14.74□□□□□ -0.05
USP40-208ENST00000450966 RRAGBQ5VZM2 374 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 PARP9Q8IXQ6 854 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 SH2D4AQ9H788 454 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 PALMDQ9NP74 551 aa14.74□□□□□ -0.05
USP40-208ENST00000450966 COL17A1Q9UMD9 1497 aaPredicted RBP14.73□□□□□ -0.05
USP40-208ENST00000450966 GNAQP50148 359 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 MAP3K7CLP57077 242 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 ESYT1Q9BSJ8 1104 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 SAR1BQ9Y6B6 198 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 SLC4A8Q2Y0W8 1093 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 STXBP4Q6ZWJ1 553 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 TMTC2Q8N394 836 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 IGSF22Q8N9C0 903 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 TROVE2P10155 538 aaKnown RBP eCLIP14.73□□□□□ -0.05
USP40-208ENST00000450966 GNAT2P19087 354 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 PHEXP78562 749 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 CNBD1Q8NA66 436 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 ANKRD20A3Q5VUR7 823 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 XAGE3Q8WTP9 111 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 RRP36Q96EU6 259 aaKnown RBP14.73□□□□□ -0.05
USP40-208ENST00000450966 LARP6Q9BRS8 491 aaKnown RBP14.73□□□□□ -0.05
USP40-208ENST00000450966 KLC4Q9NSK0 619 aa14.73□□□□□ -0.05
USP40-208ENST00000450966 TRIM66O15016 1216 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 CTNNA2P26232 953 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.72□□□□□ -0.05
USP40-208ENST00000450966 BMP15O95972 392 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 LMNAP02545 664 aaKnown RBP14.72□□□□□ -0.05
USP40-208ENST00000450966 KLHL29Q96CT2 875 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 OLFM3Q96PB7 478 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 PI4KAP2A4QPH2 592 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 GNPATO15228 680 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 HSP90AA4PQ58FG1 418 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 PI4KAP1Q8N8J0 262 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 LRRC27Q9C0I9 530 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 ENO4A6NNW6 628 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 SPTLC2O15270 562 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 MAP3K7O43318 606 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 EIF6P56537 245 aaKnown RBP14.72□□□□□ -0.05
USP40-208ENST00000450966 CALML4Q96GE6 196 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 CNNM2Q9H8M5 875 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 MBIPQ9NS73 344 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms