RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 PTPN14Q15678 1187 aa15.97■□□□□ 0.15
SCAF4-202ENST00000399804 SLIT3O75094 1523 aa15.97■□□□□ 0.15
SCAF4-202ENST00000399804 RBM6P78332 1123 aaKnown RBP15.96■□□□□ 0.15
SCAF4-202ENST00000399804 SLC27A3Q5K4L6 730 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 TMC4Q7Z404 712 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 CD209Q9NNX6 404 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 RCOR1Q9UKL0 485 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 UQCRHLA0A096LP55 91 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 NEMFO60524 1076 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 UQCRHP07919 91 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 PFKFB1P16118 471 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 EXOSC10Q01780 885 aaKnown RBP15.96■□□□□ 0.15
SCAF4-202ENST00000399804 ALX1Q15699 326 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 CLIC6Q96NY7 704 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 RTEL1Q9NZ71 1219 aa15.96■□□□□ 0.15
SCAF4-202ENST00000399804 KLRF2D3W0D1 207 aa15.96■□□□□ 0.14
SCAF4-202ENST00000399804 CYP2D6P10635 497 aa15.96■□□□□ 0.14
SCAF4-202ENST00000399804 PTGS1P23219 599 aa15.96■□□□□ 0.14
SCAF4-202ENST00000399804 SLC1A4P43007 532 aa15.96■□□□□ 0.14
SCAF4-202ENST00000399804 KIF23Q02241 960 aaPredicted RBP15.96■□□□□ 0.14
SCAF4-202ENST00000399804 UBA5Q9GZZ9 404 aa15.96■□□□□ 0.14
SCAF4-202ENST00000399804 IFNKQ9P0W0 207 aa15.96■□□□□ 0.14
SCAF4-202ENST00000399804 CNTNAP4Q9C0A0 1308 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 NALCNQ8IZF0 1738 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 CLEC17AQ6ZS10 378 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 N4BP3O15049 544 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 MRPL12P52815 198 aaKnown RBP15.95■□□□□ 0.14
SCAF4-202ENST00000399804 SUPT20HQ8NEM7 779 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 STAG1Q8WVM7 1258 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 ZNF512BQ96KM6 892 aaPredicted RBP15.95■□□□□ 0.14
SCAF4-202ENST00000399804 BRIP1Q9BX63 1249 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 RMND1Q9NWS8 449 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 SCG2P13521 617 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 ASIC1P78348 528 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 HS1BP3Q53T59 392 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 SMARCC2Q8TAQ2 1214 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 GPKOWQ92917 476 aaPredicted RBP eCLIP15.95■□□□□ 0.142e-6■■■□□ 16.4
SCAF4-202ENST00000399804 ALDH8A1Q9H2A2 487 aaPredicted RBP15.95■□□□□ 0.14
SCAF4-202ENST00000399804 DEF6Q9H4E7 631 aa15.95■□□□□ 0.14
SCAF4-202ENST00000399804 DDAH1O94760 285 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 FMNL1O95466 1100 aaPredicted RBP15.94■□□□□ 0.14
SCAF4-202ENST00000399804 NDUFA8P51970 172 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 PRR5LQ6MZQ0 368 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 LRRC47Q8N1G4 583 aaKnown RBP15.94■□□□□ 0.14
SCAF4-202ENST00000399804 TRIM47Q96LD4 638 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 CEP89Q96ST8 783 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 RNF26Q9BY78 433 aaPredicted RBP15.94■□□□□ 0.14
SCAF4-202ENST00000399804 SKILP12757 684 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 NPR1P16066 1061 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 LZTS2Q9BRK4 669 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 EXOC1Q9NV70 894 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 DLG5Q8TDM6 1919 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 CHD2O14647 1828 aaKnown RBP15.94■□□□□ 0.14
SCAF4-202ENST00000399804 NR5A1Q13285 461 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 LRP10Q7Z4F1 713 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 STAMQ92783 540 aa15.94■□□□□ 0.14
SCAF4-202ENST00000399804 SPDYE3A6NKU9 549 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 TNNT1P13805 278 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 CMA1P23946 247 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 MTIF2P46199 727 aaKnown RBP15.93■□□□□ 0.14
SCAF4-202ENST00000399804 DCP1AQ9NPI6 582 aaPredicted RBP15.93■□□□□ 0.14
SCAF4-202ENST00000399804 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.93■□□□□ 0.142e-6■■□□□ 14.1
SCAF4-202ENST00000399804 MYL5Q02045 173 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 NOLC1Q14978 699 aaKnown RBP eCLIP15.93■□□□□ 0.142e-7■■□□□ 13.6
SCAF4-202ENST00000399804 TNIP1Q15025 636 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 SLC39A14Q15043 492 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 DLGAP5Q15398 846 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 KRT79Q5XKE5 535 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 KIAA1468Q9P260 1216 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 NWD1Q149M9 1564 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 PDE4CQ08493 712 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 LINC00301Q8NCQ3 95 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 SH3RF3Q8TEJ3 882 aaPredicted RBP15.93■□□□□ 0.14
SCAF4-202ENST00000399804 GJA3Q9Y6H8 435 aa15.93■□□□□ 0.14
SCAF4-202ENST00000399804 ZYXQ15942 572 aaKnown RBP15.92■□□□□ 0.14
SCAF4-202ENST00000399804 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.92■□□□□ 0.14
SCAF4-202ENST00000399804 CCNT1O60563 726 aaKnown RBP15.92■□□□□ 0.14
SCAF4-202ENST00000399804 GPSM2P81274 684 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 NONOQ15233 471 aaKnown RBP eCLIP15.92■□□□□ 0.142e-9■□□□□ 10
SCAF4-202ENST00000399804 NUP88Q99567 741 aaPredicted RBP15.92■□□□□ 0.14
SCAF4-202ENST00000399804 TSG101Q99816 390 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 RPAP1Q9BWH6 1393 aaPredicted RBP15.92■□□□□ 0.14
SCAF4-202ENST00000399804 TNS2Q63HR2 1409 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 PLEKHG2Q9H7P9 1386 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 USP17L3A6NCW0 530 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 USP17L4A6NCW7 530 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 TRAF1Q13077 416 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 ARHGAP29Q52LW3 1261 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 NOM1Q5C9Z4 860 aaKnown RBP15.92■□□□□ 0.14
SCAF4-202ENST00000399804 USP17L1Q7RTZ2 530 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 POLR3EQ9NVU0 708 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 FRMPD2Q68DX3 1309 aaPredicted RBP15.92■□□□□ 0.14
SCAF4-202ENST00000399804 SMCO2A6NFE2 343 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 FKBP15Q5T1M5 1219 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 BLIDQ8IZY5 108 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 EHMT1Q9H9B1 1298 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 LY9Q9HBG7 655 aa15.92■□□□□ 0.14
SCAF4-202ENST00000399804 A0A0U1RQG5 324 aaPredicted RBP15.91■□□□□ 0.14
SCAF4-202ENST00000399804 TXKP42681 527 aa15.91■□□□□ 0.14
SCAF4-202ENST00000399804 PSMA7O14818 248 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms