RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Gm3646F6S692 53 aa7.35□□□□□ -1.23
Trim56-201ENSMUST00000054384 Tep1P97499 2629 aa7.35□□□□□ -1.23
Trim56-201ENSMUST00000054384 Gm3233E9Q2H5 230 aa7.34□□□□□ -1.23
Trim56-201ENSMUST00000054384 Gm37013Q8K491 104 aa7.34□□□□□ -1.23
Trim56-201ENSMUST00000054384 Chd6A3KFM7 2711 aa7.34□□□□□ -1.23
Trim56-201ENSMUST00000054384 Fam229aB2KGE5 128 aa7.34□□□□□ -1.23
Trim56-201ENSMUST00000054384 Gm10139O88245 57 aa7.34□□□□□ -1.23
Trim56-201ENSMUST00000054384 Romo1P60603 79 aa7.34□□□□□ -1.24
Trim56-201ENSMUST00000054384 Gm10320E9PW43 113 aa7.31□□□□□ -1.24
Trim56-201ENSMUST00000054384 Ep400Q8CHI8 3072 aaKnown RBP7.29□□□□□ -1.24
Trim56-201ENSMUST00000054384 Prune2Q52KR3 3084 aa7.29□□□□□ -1.24
Trim56-201ENSMUST00000054384 Itpr3P70227 2670 aa7.28□□□□□ -1.24
Trim56-201ENSMUST00000054384 Rpl37Q9D823 97 aa7.28□□□□□ -1.24
Trim56-201ENSMUST00000054384 Cystm1Q8K353 104 aa7.27□□□□□ -1.25
Trim56-201ENSMUST00000054384 Bod1lE9Q6J5 3032 aa7.25□□□□□ -1.25
Trim56-201ENSMUST00000054384 Igsf10Q3V1M1 2594 aa7.25□□□□□ -1.25
Trim56-201ENSMUST00000054384 UtrnE9Q6R7 3430 aa7.24□□□□□ -1.25
Trim56-201ENSMUST00000054384 Gm7138L7N2C3 230 aa7.23□□□□□ -1.25
Trim56-201ENSMUST00000054384 Gm3238W4VSP7 230 aa7.23□□□□□ -1.25
Trim56-201ENSMUST00000054384 Sec61bQ9CQS8 96 aaKnown RBP7.23□□□□□ -1.25
Trim56-201ENSMUST00000054384 Gm16253D3Z167 63 aa7.21□□□□□ -1.25
Trim56-201ENSMUST00000054384 Gm10382Q3V0T5 144 aa7.21□□□□□ -1.25
Trim56-201ENSMUST00000054384 Sprr1aQ62266 144 aa7.21□□□□□ -1.26
Trim56-201ENSMUST00000054384 Cep350E9Q309 3095 aa7.19□□□□□ -1.26
Trim56-201ENSMUST00000054384 Col6a5A6H584 2640 aa7.18□□□□□ -1.26
Trim56-201ENSMUST00000054384 Stab2Q8R4U0 2559 aa7.16□□□□□ -1.26
Trim56-201ENSMUST00000054384 Gm19426M0QWC7 77 aa7.16□□□□□ -1.26
Trim56-201ENSMUST00000054384 BC029722A0A0N4SW31 51 aa7.16□□□□□ -1.26
Trim56-201ENSMUST00000054384 Gm5767A0A0J9YTU8 78 aa7.15□□□□□ -1.27
Trim56-201ENSMUST00000054384 1700042G07RikB1AUF7 90 aa7.14□□□□□ -1.27
Trim56-201ENSMUST00000054384 Gm7137J3QMW1 236 aa7.13□□□□□ -1.27
Trim56-201ENSMUST00000054384 A730071L15RikQ8C4X0 137 aa7.13□□□□□ -1.27
Trim56-201ENSMUST00000054384 Nbeal2Q6ZQA0 2742 aa7.13□□□□□ -1.27
Trim56-201ENSMUST00000054384 Itpr1P11881 2749 aa7.12□□□□□ -1.27
Trim56-201ENSMUST00000054384 Krtap29-1A2A5X4 342 aa7.11□□□□□ -1.27
Trim56-201ENSMUST00000054384 Gm9508A0A1W2P7W0 230 aa7.11□□□□□ -1.27
Trim56-201ENSMUST00000054384 Ash1lQ99MY8 2958 aa7.1□□□□□ -1.27
Trim56-201ENSMUST00000054384 ApcQ61315 2845 aa7.09□□□□□ -1.27
Trim56-201ENSMUST00000054384 Itpr2Q9Z329 2701 aa7.08□□□□□ -1.28
Trim56-201ENSMUST00000054384 Ranbp2Q9ERU9 3053 aaKnown RBP7.07□□□□□ -1.28
Trim56-201ENSMUST00000054384 4933415A04RikQ9D443 101 aa7.07□□□□□ -1.28
Trim56-201ENSMUST00000054384 Tnrc18Q80WC3 2878 aa7.06□□□□□ -1.28
Trim56-201ENSMUST00000054384 Dmxl1Q6PNC0 3013 aa7.06□□□□□ -1.28
Trim56-201ENSMUST00000054384 Gm11565A2A4M7 156 aa7.06□□□□□ -1.28
Trim56-201ENSMUST00000054384 Pkd1l1Q8R526 2615 aa7.05□□□□□ -1.28
Trim56-201ENSMUST00000054384 Lelp1Q9DAE3 120 aa7.05□□□□□ -1.28
Trim56-201ENSMUST00000054384 Gm17349F7BGH6 99 aa7.04□□□□□ -1.28
Trim56-201ENSMUST00000054384 Utp20Q5XG71 2788 aaKnown RBP7.03□□□□□ -1.28
Trim56-201ENSMUST00000054384 Lama2Q60675 3118 aaKnown RBP7.03□□□□□ -1.28
Trim56-201ENSMUST00000054384 Ubr5Q80TP3 2792 aa7.02□□□□□ -1.29
Trim56-201ENSMUST00000054384 MgaA2AWL7 3003 aaKnown RBP7□□□□□ -1.29
Trim56-201ENSMUST00000054384 Cox6b2Q80ZN9 88 aa6.98□□□□□ -1.29
Trim56-201ENSMUST00000054384 2310050C09RikG5E8Z3 280 aa6.96□□□□□ -1.29
Trim56-201ENSMUST00000054384 Tex15F8VPN2 2785 aa6.93□□□□□ -1.3
Trim56-201ENSMUST00000054384 Fbn2Q61555 2907 aa6.92□□□□□ -1.3
Trim56-201ENSMUST00000054384 TrioQ0KL02 3102 aa6.92□□□□□ -1.3
Trim56-201ENSMUST00000054384 Lama3Q61789 3330 aa6.91□□□□□ -1.3
Trim56-201ENSMUST00000054384 Gm36176A0A1W2P8D5 158 aa6.9□□□□□ -1.31
Trim56-201ENSMUST00000054384 Gm2310J3QNJ2 377 aa6.89□□□□□ -1.31
Trim56-201ENSMUST00000054384 Rps29P62274 56 aa6.85□□□□□ -1.31
Trim56-201ENSMUST00000054384 DspE9Q557 2883 aaKnown RBP6.84□□□□□ -1.31
Trim56-201ENSMUST00000054384 Srrm2Q8BTI8 2703 aaKnown RBP6.84□□□□□ -1.31
Trim56-201ENSMUST00000054384 Muc2Q80Z19 2680 aa6.84□□□□□ -1.31
Trim56-201ENSMUST00000054384 Chd7A2AJK6 2986 aaKnown RBP6.84□□□□□ -1.31
Trim56-201ENSMUST00000054384 Krtap13O88375 197 aa6.84□□□□□ -1.31
Trim56-201ENSMUST00000054384 Ndufaf8A2AMZ4 74 aa6.84□□□□□ -1.31
Trim56-201ENSMUST00000054384 Usp34Q6ZQ93 3582 aa6.83□□□□□ -1.32
Trim56-201ENSMUST00000054384 Rev3lQ61493 3122 aa6.8□□□□□ -1.32
Trim56-201ENSMUST00000054384 KalrnA2CG49 2964 aa6.8□□□□□ -1.32
Trim56-201ENSMUST00000054384 Mki67E9PVX6 3177 aaKnown RBP6.79□□□□□ -1.32
Trim56-201ENSMUST00000054384 Col12a1Q60847 3120 aa6.77□□□□□ -1.33
Trim56-201ENSMUST00000054384 Gm7173A0A0G2JEB6 3132 aa6.77□□□□□ -1.33
Trim56-201ENSMUST00000054384 Vps13aQ5H8C4 3166 aa6.77□□□□□ -1.33
Trim56-201ENSMUST00000054384 Gm21887J3QQ04 176 aa6.76□□□□□ -1.33
Trim56-201ENSMUST00000054384 SmcpP15265 143 aa6.75□□□□□ -1.33
Trim56-201ENSMUST00000054384 Hivep1Q03172 2688 aa6.75□□□□□ -1.33
Trim56-201ENSMUST00000054384 Krtap14O08640 167 aa6.75□□□□□ -1.33
Trim56-201ENSMUST00000054384 Gm9112A2AI92 75 aa6.71□□□□□ -1.33
Trim56-201ENSMUST00000054384 TgO08710 2766 aa6.71□□□□□ -1.33
Trim56-201ENSMUST00000054384 FrylF8VQ05 3007 aa6.71□□□□□ -1.34
Trim56-201ENSMUST00000054384 Igfn1Q3KNY0 2849 aa6.71□□□□□ -1.34
Trim56-201ENSMUST00000054384 FryE9Q8I9 3020 aa6.71□□□□□ -1.34
Trim56-201ENSMUST00000054384 Zzef1Q5SSH7 2924 aa6.71□□□□□ -1.34
Trim56-201ENSMUST00000054384 Tnp1P10856 55 aa6.69□□□□□ -1.34
Trim56-201ENSMUST00000054384 Gm9507D3Z5T3 223 aa6.67□□□□□ -1.34
Trim56-201ENSMUST00000054384 FcgbpE9Q0B5 2583 aa6.67□□□□□ -1.34
Trim56-201ENSMUST00000054384 Cfap54Q8C6S9 3106 aa6.67□□□□□ -1.34
Trim56-201ENSMUST00000054384 D6Ertd527eA0A0N4SWI3 464 aa6.67□□□□□ -1.34
Trim56-201ENSMUST00000054384 AtmQ62388 3066 aa6.67□□□□□ -1.34
Trim56-201ENSMUST00000054384 Zfhx3Q61329 3726 aa6.67□□□□□ -1.34
Trim56-201ENSMUST00000054384 Gm40193A0A1B0GT39 78 aa6.66□□□□□ -1.34
Trim56-201ENSMUST00000054384 HttP42859 3119 aa6.64□□□□□ -1.35
Trim56-201ENSMUST00000054384 Wdfy4E9Q2M9 3149 aa6.64□□□□□ -1.35
Trim56-201ENSMUST00000054384 BptfA2A654 3036 aaKnown RBP6.64□□□□□ -1.35
Trim56-201ENSMUST00000054384 Tnp2P11378 117 aa6.63□□□□□ -1.35
Trim56-201ENSMUST00000054384 Myo15bI7HPW8 3033 aa6.62□□□□□ -1.35
Trim56-201ENSMUST00000054384 Celsr1O35161 3034 aa6.61□□□□□ -1.35
Trim56-201ENSMUST00000054384 Unc80Q8BLN6 3261 aa6.59□□□□□ -1.35
Trim56-201ENSMUST00000054384 2310061N02RikQ9D6S9 174 aa6.58□□□□□ -1.36
Trim56-201ENSMUST00000054384 Krtap10-4Q08EG8 221 aa6.57□□□□□ -1.36
Retrieved 100 of 22,080 RNA–protein pairs in 113.7 ms