RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W ARP9Q05123 467 aa6.08□□□□□ -1.44
ATG4YNL223W YET3Q07451 203 aa6.08□□□□□ -1.44
ATG4YNL223W AAD15Q08361 143 aa6.08□□□□□ -1.44
ATG4YNL223W VHS3Q08438 674 aa6.08□□□□□ -1.44
ATG4YNL223W RPS10AQ08745 105 aaPredicted RBP6.08□□□□□ -1.44
ATG4YNL223W SPE3Q12074 293 aaKnown RBP6.08□□□□□ -1.44
ATG4YNL223W HIS1P00498 297 aaKnown RBP6.07□□□□□ -1.44
ATG4YNL223W HIP1P06775 603 aa6.07□□□□□ -1.44
ATG4YNL223W CLB1P24868 471 aa6.07□□□□□ -1.44
ATG4YNL223W URA10P30402 227 aa6.07□□□□□ -1.44
ATG4YNL223W SRP101P32916 621 aa6.07□□□□□ -1.44
ATG4YNL223W ECM13P38195 257 aa6.07□□□□□ -1.44
ATG4YNL223W YBR062CP38239 180 aa6.07□□□□□ -1.44
ATG4YNL223W REV7P38927 245 aa6.07□□□□□ -1.44
ATG4YNL223W MRX1P40050 688 aa6.07□□□□□ -1.44
ATG4YNL223W YJL107CP42947 387 aa6.07□□□□□ -1.44
ATG4YNL223W CNN1P43618 361 aa6.07□□□□□ -1.44
ATG4YNL223W YJL132WP47014 750 aa6.07□□□□□ -1.44
ATG4YNL223W RTT101P47050 842 aa6.07□□□□□ -1.44
ATG4YNL223W NRD1P53617 575 aaKnown RBP RIP-Chip data6.07□□□□□ -1.44not detected
ATG4YNL223W SLU7Q02775 382 aaKnown RBP6.07□□□□□ -1.44
ATG4YNL223W GCN5Q03330 439 aa6.07□□□□□ -1.44
ATG4YNL223W HOS1Q12214 470 aa6.07□□□□□ -1.44
ATG4YNL223W SLP1Q12232 587 aa6.07□□□□□ -1.44
ATG4YNL223W SVS1Q12254 260 aa6.07□□□□□ -1.44
ATG4YNL223W GPA2P10823 449 aa6.06□□□□□ -1.44
ATG4YNL223W FUI1P38196 639 aa6.06□□□□□ -1.44
ATG4YNL223W YSW1P38280 609 aa6.06□□□□□ -1.44
ATG4YNL223W OAF1P39720 1047 aaPredicted RBP6.06□□□□□ -1.44
ATG4YNL223W DPH1P40487 425 aaKnown RBP6.06□□□□□ -1.44
ATG4YNL223W YIR016WP40572 265 aa6.06□□□□□ -1.44
ATG4YNL223W EMW1P42842 904 aaKnown RBP6.06□□□□□ -1.44
ATG4YNL223W RSC8P43609 557 aaKnown RBP6.06□□□□□ -1.44
ATG4YNL223W BFA1P47113 574 aa6.06□□□□□ -1.44
ATG4YNL223W LIA1P47120 325 aaKnown RBP6.06□□□□□ -1.44
ATG4YNL223W MRX6P48564 524 aa6.06□□□□□ -1.44
ATG4YNL223W MET13P53128 600 aa6.06□□□□□ -1.44
ATG4YNL223W COP1P53622 1201 aaKnown RBP6.06□□□□□ -1.44
ATG4YNL223W BIO4P53630 237 aa6.06□□□□□ -1.44
ATG4YNL223W PIR3Q03180 325 aa6.06□□□□□ -1.44
ATG4YNL223W YML119WQ03208 357 aa6.06□□□□□ -1.44
ATG4YNL223W ENT5Q03769 411 aaKnown RBP6.06□□□□□ -1.44
ATG4YNL223W INP2Q03824 705 aa6.06□□□□□ -1.44
ATG4YNL223W SWC7Q06707 132 aa6.06□□□□□ -1.44
ATG4YNL223W YLR053CQ12026 108 aa6.06□□□□□ -1.44
ATG4YNL223W NDJ1Q12366 352 aa6.06□□□□□ -1.44
ATG4YNL223W YEL077CQ3E7X8 1277 aa6.06□□□□□ -1.44
ATG4YNL223W VPS13Q07878 3144 aa6.05□□□□□ -1.44
ATG4YNL223W ENO2P00925 437 aaKnown RBP6.05□□□□□ -1.44
ATG4YNL223W PRP16P15938 1071 aaPredicted RBP6.05□□□□□ -1.44
ATG4YNL223W CHL1P22516 861 aaPredicted RBP6.05□□□□□ -1.44
ATG4YNL223W AMS1P22855 1083 aa6.05□□□□□ -1.44
ATG4YNL223W RAD16P31244 790 aa6.05□□□□□ -1.44
ATG4YNL223W KAP104P38217 918 aaKnown RBP6.05□□□□□ -1.44
ATG4YNL223W PRE3P38624 215 aa6.05□□□□□ -1.44
ATG4YNL223W URA8P38627 578 aaPredicted RBP6.05□□□□□ -1.44
ATG4YNL223W LIN1P38852 340 aaPredicted RBP6.05□□□□□ -1.44
ATG4YNL223W MMF1P40185 145 aaKnown RBP6.05□□□□□ -1.44
ATG4YNL223W PFK26P40433 827 aaKnown RBP6.05□□□□□ -1.44
ATG4YNL223W KTR7P40504 517 aa6.05□□□□□ -1.44
ATG4YNL223W FAF1P40546 346 aaPredicted RBP6.05□□□□□ -1.44
ATG4YNL223W GND2P53319 492 aa6.05□□□□□ -1.44
ATG4YNL223W YDR344CQ05510 147 aa6.05□□□□□ -1.44
ATG4YNL223W SLD7Q08457 257 aa6.05□□□□□ -1.44
ATG4YNL223W LPX1Q12405 387 aaKnown RBP6.05□□□□□ -1.44
ATG4YNL223W AFI1Q99222 893 aa6.05□□□□□ -1.44
ATG4YNL223W COX5AP00424 153 aa6.04□□□□□ -1.44
ATG4YNL223W YMR085WP0CF18 432 aa6.04□□□□□ -1.44
ATG4YNL223W INO1P11986 533 aa6.04□□□□□ -1.44
ATG4YNL223W APE1P14904 514 aa6.04□□□□□ -1.44
ATG4YNL223W HSP60P19882 572 aaKnown RBP6.04□□□□□ -1.44
ATG4YNL223W YCL068CP25593 260 aa6.04□□□□□ -1.44
ATG4YNL223W HEM12P32347 362 aaPredicted RBP6.04□□□□□ -1.44
ATG4YNL223W NIP1P32497 812 aaKnown RBP6.04□□□□□ -1.44
ATG4YNL223W SMI1P32566 505 aa6.04□□□□□ -1.44
ATG4YNL223W MRS6P32864 603 aaKnown RBP6.04□□□□□ -1.44
ATG4YNL223W PEX5P35056 612 aa6.04□□□□□ -1.44
ATG4YNL223W STB5P38699 743 aa6.04□□□□□ -1.44
ATG4YNL223W FMP10P40098 244 aa6.04□□□□□ -1.44
ATG4YNL223W BTT1P40314 149 aaPredicted RBP6.04□□□□□ -1.44
ATG4YNL223W ROK1P45818 564 aaPredicted RBP6.04□□□□□ -1.44
ATG4YNL223W DLD2P46681 530 aaKnown RBP6.04□□□□□ -1.44
ATG4YNL223W CCT8P47079 568 aaKnown RBP6.04□□□□□ -1.44
ATG4YNL223W HST2P53686 357 aa6.04□□□□□ -1.44
ATG4YNL223W UBX4P54730 416 aa6.04□□□□□ -1.44
ATG4YNL223W MET14Q02196 202 aa6.04□□□□□ -1.44
ATG4YNL223W ADI1Q03677 179 aa6.04□□□□□ -1.44
ATG4YNL223W SHE9Q04172 456 aa6.04□□□□□ -1.44
ATG4YNL223W NOB1Q08444 459 aaKnown RBP6.04□□□□□ -1.44
ATG4YNL223W MNL2Q12205 849 aa6.04□□□□□ -1.44
ATG4YNL223W LDB17Q12342 491 aa6.04□□□□□ -1.44
ATG4YNL223W YOL087CQ99247 1116 aa6.04□□□□□ -1.44
ATG4YNL223W MIS1P09440 975 aaKnown RBP6.03□□□□□ -1.44
ATG4YNL223W PDE1P22434 369 aa6.03□□□□□ -1.44
ATG4YNL223W PAT1P25644 796 aaKnown RBP6.03□□□□□ -1.44
ATG4YNL223W MCM5P29496 775 aaKnown RBP6.03□□□□□ -1.44
ATG4YNL223W SEC6P32844 805 aa6.03□□□□□ -1.44
ATG4YNL223W NUP60P39705 539 aa6.03□□□□□ -1.44
ATG4YNL223W SSP120P39931 234 aaKnown RBP6.03□□□□□ -1.44
ATG4YNL223W ELO3P40319 345 aa6.03□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms