RNA–Protein interactions for RNA: YNL079C

TPM1, Transcript of Major isoform of tropomyosin, yeast

Gene TPM1, Length 600 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPM1	YNL079C	MDR1	P53258	950 aa		4.14	□□□□□ -1.75
TPM1	YNL079C	CEG1	Q01159	459 aa	Predicted RBP	4.14	□□□□□ -1.75
TPM1	YNL079C	EFR3	Q03653	782 aa	Known RBP	4.14	□□□□□ -1.75
TPM1	YNL079C	CEF1	Q03654	590 aa	Predicted RBP	4.14	□□□□□ -1.75
TPM1	YNL079C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
TPM1	YNL079C	LAM4	P38800	1345 aa		4.14	□□□□□ -1.75
TPM1	YNL079C	URB1	P34241	1764 aa	Known RBP	4.13	□□□□□ -1.75
TPM1	YNL079C	FKS3	Q04952	1785 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	URA3	P03962	267 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	VPS33	P20795	691 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	ARG1	P22768	420 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	DMC1	P25453	334 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	PET309	P32522	965 aa	Predicted RBP	4.13	□□□□□ -1.75
TPM1	YNL079C	SDS22	P36047	338 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	YKL133C	P36066	463 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	YJL193W	P39542	402 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	SAW1	P39735	261 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	PIP2	P52960	996 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	VPS73	P53142	486 aa	Known RBP	4.13	□□□□□ -1.75
TPM1	YNL079C	SPC98	P53540	846 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	HOS1	Q12214	470 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	NYV1	Q12255	253 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	EDE1	P34216	1381 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	RSF2	P46974	1380 aa		4.13	□□□□□ -1.75
TPM1	YNL079C	VAS1	P07806	1104 aa	Known RBP	4.12	□□□□□ -1.75
TPM1	YNL079C	ADH4	P10127	382 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	STE4	P18851	423 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	PTP2	P29461	750 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	DHR2	P36009	735 aa	Predicted RBP	4.12	□□□□□ -1.75
TPM1	YNL079C	RRP8	P38961	392 aa	Known RBP	4.12	□□□□□ -1.75
TPM1	YNL079C	QRI1	P43123	477 aa	Known RBP	4.12	□□□□□ -1.75
TPM1	YNL079C	YFR016C	P43597	1233 aa	Known RBP	4.12	□□□□□ -1.75
TPM1	YNL079C	STU2	P46675	888 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	ATG36	P46983	293 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	DAK1	P54838	584 aa	Known RBP	4.12	□□□□□ -1.75
TPM1	YNL079C	TRI1	Q05024	226 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	MLC2	Q06580	163 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	YOL114C	Q12322	202 aa		4.12	□□□□□ -1.75
TPM1	YNL079C	DBP10	Q12389	995 aa	Known RBP	4.12	□□□□□ -1.75
TPM1	YNL079C	SEC12	P11655	471 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	GFA1	P14742	717 aa	Known RBP	4.11	□□□□□ -1.75
TPM1	YNL079C	CBP3	P21560	335 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	CAP1	P28495	268 aa	Known RBP	4.11	□□□□□ -1.75
TPM1	YNL079C	EMP70	P32802	667 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	YMC2	P38087	329 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	TDP1	P38319	544 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	MIT1	P40002	666 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	HIS6	P40545	261 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	THI6	P41835	540 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	PMT6	P42934	759 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	SUT2	Q12286	268 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	ARP7	Q12406	477 aa		4.11	□□□□□ -1.75
TPM1	YNL079C	PCK1	P10963	549 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	SWD1	P39706	426 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	IMA5	P40884	581 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	GSM1	P42950	618 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	MFM1	Q02783	413 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	NGL2	Q03264	515 aa	Known RBP	4.1	□□□□□ -1.75
TPM1	YNL079C	YDR179W-A	Q03983	463 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	RRP6	Q12149	733 aa	Known RBP	4.1	□□□□□ -1.75
TPM1	YNL079C	ENT1	Q12518	454 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	LYS2	P07702	1392 aa		4.1	□□□□□ -1.75
TPM1	YNL079C	PHO5	P00635	467 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	CNE1	P27825	502 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	DSS4	P32601	143 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	YLF2	P38746	405 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	TPM2	P40414	161 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	QRI7	P43122	407 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	YIP4	P53093	235 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	TEP1	P53916	434 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	RPS15	Q01855	142 aa	Known RBP	4.09	□□□□□ -1.75
TPM1	YNL079C	USA1	Q03714	838 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	TRS23	Q03784	219 aa		4.09	□□□□□ -1.75
TPM1	YNL079C	MSS18	P08593	268 aa		4.08	□□□□□ -1.76
TPM1	YNL079C	RIM4	P38741	713 aa		4.08	□□□□□ -1.76
TPM1	YNL079C	MAD3	P47074	515 aa		4.08	□□□□□ -1.76
TPM1	YNL079C	TAN1	P53072	289 aa	Predicted RBP	4.08	□□□□□ -1.76
TPM1	YNL079C	BUD17	P53727	317 aa		4.08	□□□□□ -1.76
TPM1	YNL079C	CSI1	Q04368	295 aa		4.08	□□□□□ -1.76
TPM1	YNL079C	BRE1	Q07457	700 aa	Known RBP	4.08	□□□□□ -1.76
TPM1	YNL079C	YPL216W	Q08964	1102 aa		4.08	□□□□□ -1.76
TPM1	YNL079C	MDM20	Q12387	796 aa	Known RBP	4.08	□□□□□ -1.76
TPM1	YNL079C	PIF1	P07271	859 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	RPS19A	P07280	144 aa	Known RBP	4.07	□□□□□ -1.76
TPM1	YNL079C	RPS19B	P07281	144 aa	Predicted RBP	4.07	□□□□□ -1.76
TPM1	YNL079C	STB5	P38699	743 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	YHL041W	P38730	149 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	MUP3	P38734	546 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	PIH1	P38768	344 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	YNG2	P38806	282 aa	Known RBP	4.07	□□□□□ -1.76
TPM1	YNL079C	YIL166C	P40445	542 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	COS12	P53053	380 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	RTS3	P53289	263 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	ADE16	P54113	591 aa	Known RBP	4.07	□□□□□ -1.76
TPM1	YNL079C	ACS1	Q01574	713 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	HOF1	Q05080	669 aa		4.07	□□□□□ -1.76
TPM1	YNL079C	RPN13	O13563	156 aa		4.06	□□□□□ -1.76
TPM1	YNL079C	MRP7	P12687	371 aa		4.06	□□□□□ -1.76
TPM1	YNL079C	OSM1	P21375	501 aa	Known RBP	4.06	□□□□□ -1.76
TPM1	YNL079C	CCL1	P37366	393 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 25.8 ms