RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHR3	YDL212W	YER175W-A	Q8TGU4	54 aa		4.91	□□□□□ -1.62
SHR3	YDL212W	PNO1	Q99216	274 aa	Known RBP	4.91	□□□□□ -1.62
SHR3	YDL212W	RTC1	Q08281	1341 aa		4.91	□□□□□ -1.62
SHR3	YDL212W	TMT1	P32643	299 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	TOM20	P35180	183 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	TAF5	P38129	798 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	IMD2	P38697	523 aa	Known RBP	4.9	□□□□□ -1.63
SHR3	YDL212W	MAM1	P40065	302 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	PSA1	P41940	361 aa	Known RBP	4.9	□□□□□ -1.63
SHR3	YDL212W	IMD3	P50095	523 aa	Known RBP	4.9	□□□□□ -1.63
SHR3	YDL212W	GLO1	P50107	326 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	STP1	Q00947	519 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	CRD1	Q07560	283 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	YOL114C	Q12322	202 aa		4.9	□□□□□ -1.63
SHR3	YDL212W	TMA7	Q3E764	64 aa	Known RBP	4.9	□□□□□ -1.63
SHR3	YDL212W	FRD1	P32614	470 aa	Known RBP	4.89	□□□□□ -1.63
SHR3	YDL212W	ESF2	P53743	316 aa	Known RBP	4.89	□□□□□ -1.63
SHR3	YDL212W	MOT3	P54785	490 aa	Known RBP	4.89	□□□□□ -1.63
SHR3	YDL212W	RAD34	Q06665	692 aa		4.89	□□□□□ -1.63
SHR3	YDL212W	ICL2	Q12031	575 aa		4.89	□□□□□ -1.63
SHR3	YDL212W	CTT1	P06115	562 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	YMR085W	P0CF18	432 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	SST2	P11972	698 aa	Known RBP	4.88	□□□□□ -1.63
SHR3	YDL212W	MAK32	P23060	363 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	URE2	P23202	354 aa	Known RBP	4.88	□□□□□ -1.63
SHR3	YDL212W	LAS21	P40367	830 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	GAT1	P43574	510 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	VPS64	Q03944	604 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	PLM2	Q04383	521 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	TPO3	Q06451	622 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	AIM6	Q07716	390 aa		4.88	□□□□□ -1.63
SHR3	YDL212W	KGD2	P19262	463 aa	Predicted RBP	4.87	□□□□□ -1.63
SHR3	YDL212W	KES1	P35844	434 aa	Known RBP	4.87	□□□□□ -1.63
SHR3	YDL212W	FTH1	P38310	465 aa		4.87	□□□□□ -1.63
SHR3	YDL212W	STT3	P39007	718 aa	Known RBP	4.87	□□□□□ -1.63
SHR3	YDL212W	SNO3	P43544	222 aa		4.87	□□□□□ -1.63
SHR3	YDL212W	IDP3	P53982	420 aa	Known RBP	4.87	□□□□□ -1.63
SHR3	YDL212W	MET14	Q02196	202 aa		4.87	□□□□□ -1.63
SHR3	YDL212W	YPL071C	Q02864	156 aa		4.87	□□□□□ -1.63
SHR3	YDL212W	BRE1	Q07457	700 aa	Known RBP	4.87	□□□□□ -1.63
SHR3	YDL212W	YAP7	Q08182	245 aa		4.87	□□□□□ -1.63
SHR3	YDL212W	RGT2	Q12300	763 aa		4.87	□□□□□ -1.63
SHR3	YDL212W	SES1	P07284	462 aa	Known RBP	4.86	□□□□□ -1.63
SHR3	YDL212W	LNP1	P38878	278 aa		4.86	□□□□□ -1.63
SHR3	YDL212W	RRP8	P38961	392 aa	Known RBP	4.86	□□□□□ -1.63
SHR3	YDL212W	GEP3	Q08622	556 aa		4.86	□□□□□ -1.63
SHR3	YDL212W	BI2	P03873	423 aa		4.85	□□□□□ -1.63
SHR3	YDL212W	GAL1	P04385	528 aa		4.85	□□□□□ -1.63
SHR3	YDL212W	YAP1	P19880	650 aa	Known RBP	4.85	□□□□□ -1.63
SHR3	YDL212W	ERC1	P38767	581 aa		4.85	□□□□□ -1.63
SHR3	YDL212W	UBP7	P40453	1071 aa		4.85	□□□□□ -1.63
SHR3	YDL212W	ERG13	P54839	491 aa	Known RBP	4.85	□□□□□ -1.63
SHR3	YDL212W	CRC1	Q12289	327 aa		4.85	□□□□□ -1.63
SHR3	YDL212W	SIR1	P21691	654 aa		4.84	□□□□□ -1.63
SHR3	YDL212W	SWI4	P25302	1093 aa	Known RBP	4.84	□□□□□ -1.63
SHR3	YDL212W	ERV46	P39727	415 aa		4.84	□□□□□ -1.63
SHR3	YDL212W	RAD26	P40352	1085 aa		4.84	□□□□□ -1.63
SHR3	YDL212W	CIN1	P40987	1014 aa		4.84	□□□□□ -1.63
SHR3	YDL212W	CIR1	P42940	261 aa		4.84	□□□□□ -1.63
SHR3	YDL212W	QRI7	P43122	407 aa		4.84	□□□□□ -1.63
SHR3	YDL212W	TEP1	P53916	434 aa		4.84	□□□□□ -1.63
SHR3	YDL212W	LYS21	Q12122	440 aa	Known RBP	4.84	□□□□□ -1.63
SHR3	YDL212W	CET1	O13297	549 aa	Predicted RBP	4.83	□□□□□ -1.64
SHR3	YDL212W	MSS18	P08593	268 aa		4.83	□□□□□ -1.64
SHR3	YDL212W	GRX7	P38068	203 aa		4.83	□□□□□ -1.64
SHR3	YDL212W	NPA3	P47122	385 aa		4.83	□□□□□ -1.64
SHR3	YDL212W	SNU56	Q03782	492 aa	Known RBP	4.83	□□□□□ -1.64
SHR3	YDL212W	EIS1	Q05050	843 aa	Known RBP	4.83	□□□□□ -1.64
SHR3	YDL212W	APM3	P38153	483 aa		4.82	□□□□□ -1.64
SHR3	YDL212W	VBA2	P38358	474 aa	Known RBP	4.82	□□□□□ -1.64
SHR3	YDL212W	SPC72	P39723	622 aa		4.82	□□□□□ -1.64
SHR3	YDL212W	TAM41	P53230	385 aa		4.82	□□□□□ -1.64
SHR3	YDL212W	ARA2	Q04212	335 aa		4.82	□□□□□ -1.64
SHR3	YDL212W	MLC2	Q06580	163 aa		4.82	□□□□□ -1.64
SHR3	YDL212W	GAL4	P04386	881 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	ADE3	P07245	946 aa	Known RBP	4.81	□□□□□ -1.64
SHR3	YDL212W	GSH1	P32477	678 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	YKL133C	P36066	463 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	IRC7	P43623	340 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	SEC5	P89102	971 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	HIM1	Q06674	414 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	CIR2	Q08822	631 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	YBR255C-A	Q3E776	120 aa		4.81	□□□□□ -1.64
SHR3	YDL212W	RIT1	P23796	513 aa		4.8	□□□□□ -1.64
SHR3	YDL212W	YIL024C	P40543	189 aa		4.8	□□□□□ -1.64
SHR3	YDL212W	HIS6	P40545	261 aa		4.8	□□□□□ -1.64
SHR3	YDL212W	NOP2	P40991	618 aa	Known RBP	4.8	□□□□□ -1.64
SHR3	YDL212W	YGR079W	P53249	370 aa		4.8	□□□□□ -1.64
SHR3	YDL212W	COP1	P53622	1201 aa	Known RBP	4.8	□□□□□ -1.64
SHR3	YDL212W	YAT1	P80235	687 aa		4.8	□□□□□ -1.64
SHR3	YDL212W	YOR389W	Q08912	624 aa		4.8	□□□□□ -1.64
SHR3	YDL212W	YPL191C	Q08930	360 aa		4.8	□□□□□ -1.64
SHR3	YDL212W	PIF1	P07271	859 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	YER190C-B	P0CX94	160 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	YEL077W-A	P0CX95	160 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	YGR296C-B	P0CX96	160 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	YPL283W-B	P0CX97	160 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	YPR204C-A	P0CX98	160 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	POL3	P15436	1097 aa		4.79	□□□□□ -1.64
SHR3	YDL212W	PDE1	P22434	369 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 22.9 ms