RNA–Protein interactions for RNA: ENST00000588419.1

HDAC5-208, Transcript of histone deacetylase 5, humanhuman

TSL 2

Gene HDAC5, Length 742 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC5-208ENST00000588419 SHISA4Q96DD7 197 aa16.85■□□□□ 0.29
HDAC5-208ENST00000588419 RNF208Q9H0X6 261 aa16.85■□□□□ 0.29
HDAC5-208ENST00000588419 AATFQ9NY61 560 aaKnown RBP eCLIP16.85■□□□□ 0.29
HDAC5-208ENST00000588419 PCDH10Q9P2E7 1040 aa16.85■□□□□ 0.29
HDAC5-208ENST00000588419 TNPO2O14787 897 aaKnown RBP16.84■□□□□ 0.29
HDAC5-208ENST00000588419 HNRNPUQ00839 825 aaKnown RBP eCLIP16.84■□□□□ 0.29
HDAC5-208ENST00000588419 TREML2Q5T2D2 321 aa16.84■□□□□ 0.29
HDAC5-208ENST00000588419 NAA16Q6N069 864 aaPredicted RBP16.84■□□□□ 0.29
HDAC5-208ENST00000588419 ITPRIPQ8IWB1 547 aa16.84■□□□□ 0.29
HDAC5-208ENST00000588419 ANKRD13CQ8N6S4 541 aa16.84■□□□□ 0.29
HDAC5-208ENST00000588419 DBNDD2Q9BQY9 259 aa16.84■□□□□ 0.29
HDAC5-208ENST00000588419 AGTPBP1Q9UPW5 1226 aa16.84■□□□□ 0.29
HDAC5-208ENST00000588419 COL2A1P02458 1487 aaPredicted RBP16.83■□□□□ 0.28
HDAC5-208ENST00000588419 TNNI3KQ59H18 835 aa16.83■□□□□ 0.28
HDAC5-208ENST00000588419 CCDC158Q5M9N0 1113 aa16.83■□□□□ 0.28
HDAC5-208ENST00000588419 SLAIN1Q8ND83 568 aa16.83■□□□□ 0.28
HDAC5-208ENST00000588419 DPF3Q92784 378 aa16.83■□□□□ 0.28
HDAC5-208ENST00000588419 TRIM34Q9BYJ4 488 aa16.83■□□□□ 0.28
HDAC5-208ENST00000588419 PNMA3Q9UL41 463 aa16.83■□□□□ 0.28
HDAC5-208ENST00000588419 FPGT-TNNI3KV9GXZ4 949 aa16.83■□□□□ 0.28
HDAC5-208ENST00000588419 ADCY3O60266 1144 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 SURF6O75683 361 aaKnown RBP16.82■□□□□ 0.28
HDAC5-208ENST00000588419 ELNP15502 786 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 FLT3LGP49771 235 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 HMGCS2P54868 508 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 MAP3K10Q02779 954 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 SPP2Q13103 211 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 MAPKAPK5Q8IW41 473 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 SLC45A1Q9Y2W3 748 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 NAV1Q8NEY1 1877 aa16.82■□□□□ 0.28
HDAC5-208ENST00000588419 H0YGN5 161 aa16.81■□□□□ 0.28
HDAC5-208ENST00000588419 TBC1D12O60347 775 aa16.81■□□□□ 0.28
HDAC5-208ENST00000588419 BAG3O95817 575 aa16.81■□□□□ 0.28
HDAC5-208ENST00000588419 ZNF280CQ8ND82 737 aa16.81■□□□□ 0.28
HDAC5-208ENST00000588419 NKX2-3Q8TAU0 364 aa16.81■□□□□ 0.28
HDAC5-208ENST00000588419 TGFBRAP1Q8WUH2 860 aa16.81■□□□□ 0.28
HDAC5-208ENST00000588419 UNC93B1Q9H1C4 597 aa16.81■□□□□ 0.28
HDAC5-208ENST00000588419 COLQQ9Y215 455 aaPredicted RBP16.81■□□□□ 0.28
HDAC5-208ENST00000588419 MYH8P13535 1937 aa16.8■□□□□ 0.28
HDAC5-208ENST00000588419 ALPK3Q96L96 1907 aa16.8■□□□□ 0.28
HDAC5-208ENST00000588419 PLXNB2O15031 1838 aa16.8■□□□□ 0.28
HDAC5-208ENST00000588419 INHAP05111 366 aa16.8■□□□□ 0.28
HDAC5-208ENST00000588419 POLA2Q14181 598 aa16.8■□□□□ 0.28
HDAC5-208ENST00000588419 RRP1BQ14684 758 aaKnown RBP16.8■□□□□ 0.28
HDAC5-208ENST00000588419 CRACR2BQ8N4Y2 399 aaPredicted RBP16.8■□□□□ 0.28
HDAC5-208ENST00000588419 COA7Q96BR5 231 aa16.8■□□□□ 0.28
HDAC5-208ENST00000588419 AS3MTQ9HBK9 375 aa16.8■□□□□ 0.28
HDAC5-208ENST00000588419 SAP30BPQ9UHR5 308 aaKnown RBP16.8■□□□□ 0.28
HDAC5-208ENST00000588419 FLT1P17948 1338 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 USP17L5A8MUK1 530 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 NPM3O75607 178 aaKnown RBP16.79■□□□□ 0.28
HDAC5-208ENST00000588419 GDF11O95390 407 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 MAP4K4O95819 1239 aaPredicted RBP16.79■□□□□ 0.28
HDAC5-208ENST00000588419 GJB1P08034 283 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 CAP2P40123 477 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 ZAP70P43403 619 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 GJA8P48165 433 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 ATP8B2P98198 1209 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 ADGRA1Q86SQ6 560 aa16.79■□□□□ 0.28
HDAC5-208ENST00000588419 PROCA1Q8NCQ7 364 aaPredicted RBP16.79■□□□□ 0.28
HDAC5-208ENST00000588419 CCDC8Q9H0W5 538 aaPredicted RBP16.79■□□□□ 0.28
HDAC5-208ENST00000588419 TLR7Q9NYK1 1049 aaKnown RBP16.79■□□□□ 0.28
HDAC5-208ENST00000588419 FARP2O94887 1054 aaPredicted RBP16.78■□□□□ 0.28
HDAC5-208ENST00000588419 CYP2E1P05181 493 aaPredicted RBP16.78■□□□□ 0.28
HDAC5-208ENST00000588419 PLCG2P16885 1265 aa16.78■□□□□ 0.28
HDAC5-208ENST00000588419 PABPC4Q13310 644 aaKnown RBP eCLIP16.78■□□□□ 0.28
HDAC5-208ENST00000588419 MTMR2Q13614 643 aa16.78■□□□□ 0.28
HDAC5-208ENST00000588419 CHRDL2Q6WN34 429 aa16.78■□□□□ 0.28
HDAC5-208ENST00000588419 SSH3Q8TE77 659 aa16.78■□□□□ 0.28
HDAC5-208ENST00000588419 U2AF1L4Q8WU68 220 aaKnown RBP16.78■□□□□ 0.28
HDAC5-208ENST00000588419 GPR108Q9NPR9 543 aa16.78■□□□□ 0.28
HDAC5-208ENST00000588419 PIH1D3Q9NQM4 214 aaKnown RBP16.78■□□□□ 0.28
HDAC5-208ENST00000588419 PI4KBQ9UBF8 816 aa16.78■□□□□ 0.28
HDAC5-208ENST00000588419 HERC5Q9UII4 1024 aaKnown RBP16.78■□□□□ 0.28
HDAC5-208ENST00000588419 IDH1O75874 414 aaKnown RBP16.77■□□□□ 0.28
HDAC5-208ENST00000588419 DYNLL1P63167 89 aaKnown RBP16.77■□□□□ 0.28
HDAC5-208ENST00000588419 IRX3P78415 501 aaPredicted RBP16.77■□□□□ 0.28
HDAC5-208ENST00000588419 FAM110CQ1W6H9 321 aa16.77■□□□□ 0.28
HDAC5-208ENST00000588419 SHROOM1Q2M3G4 852 aaPredicted RBP16.77■□□□□ 0.28
HDAC5-208ENST00000588419 HTATIP2Q9BUP3 242 aa16.77■□□□□ 0.28
HDAC5-208ENST00000588419 TBC1D2Q9BYX2 928 aa16.77■□□□□ 0.28
HDAC5-208ENST00000588419 BCL11AQ9H165 835 aa16.77■□□□□ 0.28
HDAC5-208ENST00000588419 TMOD4Q9NZQ9 345 aa16.77■□□□□ 0.28
HDAC5-208ENST00000588419 DBNLQ9UJU6 430 aaKnown RBP16.77■□□□□ 0.28
HDAC5-208ENST00000588419 PALD1Q9ULE6 856 aa16.77■□□□□ 0.28
HDAC5-208ENST00000588419 NDUFB9Q9Y6M9 179 aa16.77■□□□□ 0.28
HDAC5-208ENST00000588419 CEP290O15078 2479 aa16.77■□□□□ 0.27
HDAC5-208ENST00000588419 RLBP1P12271 317 aa16.76■□□□□ 0.27
HDAC5-208ENST00000588419 CYP7A1P22680 504 aa16.76■□□□□ 0.27
HDAC5-208ENST00000588419 MIGA1Q8NAN2 632 aa16.76■□□□□ 0.27
HDAC5-208ENST00000588419 DEFB118Q96PH6 123 aa16.76■□□□□ 0.27
HDAC5-208ENST00000588419 ASCC2Q9H1I8 757 aaPredicted RBP16.76■□□□□ 0.27
HDAC5-208ENST00000588419 DHX36Q9H2U1 1008 aaKnown RBP16.76■□□□□ 0.27
HDAC5-208ENST00000588419 DDX60LQ5H9U9 1706 aaKnown RBP16.76■□□□□ 0.27
HDAC5-208ENST00000588419 TFRCP02786 760 aaKnown RBP16.75■□□□□ 0.27
HDAC5-208ENST00000588419 HLA-DOAP06340 250 aa16.75■□□□□ 0.27
HDAC5-208ENST00000588419 GCLCP48506 637 aaPredicted RBP16.75■□□□□ 0.27
HDAC5-208ENST00000588419 FXR1P51114 621 aaKnown RBP eCLIP16.75■□□□□ 0.27
HDAC5-208ENST00000588419 DNAJC18Q9H819 358 aa16.75■□□□□ 0.27
HDAC5-208ENST00000588419 SGPL1O95470 568 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms