RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 ARID4AP29374 1257 aaPredicted RBP15.97■□□□□ 0.15
SF3B3-202ENST00000562722 MCAMP43121 646 aa15.97■□□□□ 0.15
SF3B3-202ENST00000562722 SPP2Q13103 211 aa15.97■□□□□ 0.15
SF3B3-202ENST00000562722 TTC39AQ5SRH9 613 aa15.97■□□□□ 0.15
SF3B3-202ENST00000562722 TREML2Q5T2D2 321 aa15.97■□□□□ 0.15
SF3B3-202ENST00000562722 U2AF1L4Q8WU68 220 aaKnown RBP15.97■□□□□ 0.15
SF3B3-202ENST00000562722 HTATIP2Q9BUP3 242 aa15.97■□□□□ 0.15
SF3B3-202ENST00000562722 OSBPL5Q9H0X9 879 aaPredicted RBP15.97■□□□□ 0.15
SF3B3-202ENST00000562722 UNC93B1Q9H1C4 597 aa15.97■□□□□ 0.15
SF3B3-202ENST00000562722 FXR1P51114 621 aaKnown RBP eCLIP15.96■□□□□ 0.15
SF3B3-202ENST00000562722 CHRDL2Q6WN34 429 aa15.96■□□□□ 0.15
SF3B3-202ENST00000562722 ZNF280CQ8ND82 737 aa15.96■□□□□ 0.15
SF3B3-202ENST00000562722 SH3RF3Q8TEJ3 882 aaPredicted RBP15.96■□□□□ 0.15
SF3B3-202ENST00000562722 COA7Q96BR5 231 aa15.96■□□□□ 0.15
SF3B3-202ENST00000562722 SNRKQ9NRH2 765 aa15.96■□□□□ 0.15
SF3B3-202ENST00000562722 FARP2O94887 1054 aaPredicted RBP15.95■□□□□ 0.14
SF3B3-202ENST00000562722 BAG3O95817 575 aa15.95■□□□□ 0.14
SF3B3-202ENST00000562722 INHAP05111 366 aa15.95■□□□□ 0.14
SF3B3-202ENST00000562722 HMGCS2P54868 508 aa15.95■□□□□ 0.14
SF3B3-202ENST00000562722 PABPC4Q13310 644 aaKnown RBP eCLIP15.95■□□□□ 0.14
SF3B3-202ENST00000562722 CCDC158Q5M9N0 1113 aa15.95■□□□□ 0.14
SF3B3-202ENST00000562722 NAA16Q6N069 864 aaPredicted RBP15.95■□□□□ 0.14
SF3B3-202ENST00000562722 PROCA1Q8NCQ7 364 aaPredicted RBP15.95■□□□□ 0.14
SF3B3-202ENST00000562722 TRIM34Q9BYJ4 488 aa15.95■□□□□ 0.14
SF3B3-202ENST00000562722 AS3MTQ9HBK9 375 aa15.95■□□□□ 0.14
SF3B3-202ENST00000562722 AATFQ9NY61 560 aaKnown RBP eCLIP15.95■□□□□ 0.14
SF3B3-202ENST00000562722 USP17L5A8MUK1 530 aa15.94■□□□□ 0.14
SF3B3-202ENST00000562722 TFRCP02786 760 aaKnown RBP15.94■□□□□ 0.14
SF3B3-202ENST00000562722 CAP2P40123 477 aa15.94■□□□□ 0.14
SF3B3-202ENST00000562722 ZKSCAN2Q63HK3 967 aa15.94■□□□□ 0.14
SF3B3-202ENST00000562722 TMEM57Q8N5G2 664 aa15.94■□□□□ 0.14
SF3B3-202ENST00000562722 PXYLP1Q8TE99 480 aa15.94■□□□□ 0.14
SF3B3-202ENST00000562722 TBC1D2Q9BYX2 928 aa15.94■□□□□ 0.14
SF3B3-202ENST00000562722 HERC5Q9UII4 1024 aaKnown RBP15.94■□□□□ 0.14
SF3B3-202ENST00000562722 COL2A1P02458 1487 aaPredicted RBP15.94■□□□□ 0.14
SF3B3-202ENST00000562722 SGPL1O95470 568 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 PLCG2P16885 1265 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 IRF5Q13568 498 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 FAM110CQ1W6H9 321 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 TNNI3KQ59H18 835 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 MAPKAPK5Q8IW41 473 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 DEFB118Q96PH6 123 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 PI4KBQ9UBF8 816 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 NR2E3Q9Y5X4 410 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 FPGT-TNNI3KV9GXZ4 949 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 MGAMO43451 1857 aa15.93■□□□□ 0.14
SF3B3-202ENST00000562722 SURF6O75683 361 aaKnown RBP15.92■□□□□ 0.14
SF3B3-202ENST00000562722 GCLCP48506 637 aaPredicted RBP15.92■□□□□ 0.14
SF3B3-202ENST00000562722 FTSJ3Q8IY81 847 aaKnown RBP15.92■□□□□ 0.14
SF3B3-202ENST00000562722 CRACR2BQ8N4Y2 399 aaPredicted RBP15.92■□□□□ 0.14
SF3B3-202ENST00000562722 TGFBRAP1Q8WUH2 860 aa15.92■□□□□ 0.14
SF3B3-202ENST00000562722 DBNDD2Q9BQY9 259 aa15.92■□□□□ 0.14
SF3B3-202ENST00000562722 DHX36Q9H2U1 1008 aaKnown RBP15.92■□□□□ 0.14
SF3B3-202ENST00000562722 C1orf115Q9H7X2 142 aa15.92■□□□□ 0.14
SF3B3-202ENST00000562722 TMOD4Q9NZQ9 345 aa15.92■□□□□ 0.14
SF3B3-202ENST00000562722 PTPRFP10586 1907 aa15.92■□□□□ 0.14
SF3B3-202ENST00000562722 PHIPQ8WWQ0 1821 aa15.91■□□□□ 0.14
SF3B3-202ENST00000562722 IRX3P78415 501 aaPredicted RBP15.91■□□□□ 0.14
SF3B3-202ENST00000562722 MTMR2Q13614 643 aa15.91■□□□□ 0.14
SF3B3-202ENST00000562722 RRP1BQ14684 758 aaKnown RBP15.91■□□□□ 0.14
SF3B3-202ENST00000562722 ASCC2Q9H1I8 757 aaPredicted RBP15.91■□□□□ 0.14
SF3B3-202ENST00000562722 GPR108Q9NPR9 543 aa15.91■□□□□ 0.14
SF3B3-202ENST00000562722 POLA2Q14181 598 aa15.9■□□□□ 0.14
SF3B3-202ENST00000562722 UBE2Q1Q7Z7E8 422 aa15.9■□□□□ 0.14
SF3B3-202ENST00000562722 ITPRIPQ8IWB1 547 aa15.9■□□□□ 0.14
SF3B3-202ENST00000562722 SAP30BPQ9UHR5 308 aaKnown RBP15.9■□□□□ 0.14
SF3B3-202ENST00000562722 FLT1P17948 1338 aa15.9■□□□□ 0.14
SF3B3-202ENST00000562722 EVI5O60447 810 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 CYP2E1P05181 493 aaPredicted RBP15.89■□□□□ 0.13
SF3B3-202ENST00000562722 HLA-DOAP06340 250 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 ASNSP08243 561 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 ZAP70P43403 619 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 ATP8B2P98198 1209 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 ADGRA1Q86SQ6 560 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 SSH3Q8TE77 659 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 RBM27Q9P2N5 1060 aaKnown RBP15.89■□□□□ 0.13
SF3B3-202ENST00000562722 PALD1Q9ULE6 856 aa15.89■□□□□ 0.13
SF3B3-202ENST00000562722 LOC285556D6RIA3 1793 aa15.88■□□□□ 0.13
SF3B3-202ENST00000562722 MAST2Q6P0Q8 1798 aa15.88■□□□□ 0.13
SF3B3-202ENST00000562722 GDF11O95390 407 aa15.88■□□□□ 0.13
SF3B3-202ENST00000562722 HMGCRP04035 888 aa15.88■□□□□ 0.13
SF3B3-202ENST00000562722 BACE1P56817 501 aa15.88■□□□□ 0.13
SF3B3-202ENST00000562722 SH3D19Q5HYK7 790 aa15.88■□□□□ 0.13
SF3B3-202ENST00000562722 FOXP4Q8IVH2 680 aaPredicted RBP15.88■□□□□ 0.13
SF3B3-202ENST00000562722 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.88■□□□□ 0.13
SF3B3-202ENST00000562722 PIH1D3Q9NQM4 214 aaKnown RBP15.88■□□□□ 0.13
SF3B3-202ENST00000562722 PAK6Q9NQU5 681 aaPredicted RBP15.88■□□□□ 0.13
SF3B3-202ENST00000562722 ATAD5Q96QE3 1844 aa15.87■□□□□ 0.13
SF3B3-202ENST00000562722 IDH1O75874 414 aaKnown RBP15.87■□□□□ 0.13
SF3B3-202ENST00000562722 CAPN2P17655 700 aa15.87■□□□□ 0.13
SF3B3-202ENST00000562722 CYP7A1P22680 504 aa15.87■□□□□ 0.13
SF3B3-202ENST00000562722 PPP4CP60510 307 aa15.87■□□□□ 0.13
SF3B3-202ENST00000562722 CCAR1Q8IX12 1150 aaKnown RBP15.87■□□□□ 0.13
SF3B3-202ENST00000562722 WDR18Q9BV38 432 aa15.87■□□□□ 0.13
SF3B3-202ENST00000562722 CCDC8Q9H0W5 538 aaPredicted RBP15.87■□□□□ 0.13
SF3B3-202ENST00000562722 C19orf81C9J6K1 198 aa15.86■□□□□ 0.13
SF3B3-202ENST00000562722 USP17L10C9JJH3 530 aa15.86■□□□□ 0.13
SF3B3-202ENST00000562722 ZBTB7BO15156 539 aaPredicted RBP15.86■□□□□ 0.13
SF3B3-202ENST00000562722 DYNLL1P63167 89 aaKnown RBP15.86■□□□□ 0.13
SF3B3-202ENST00000562722 HNRNPUQ00839 825 aaKnown RBP eCLIP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms