RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 NPHS2Q9NP85 383 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 PRDM7Q9NQW5 492 aa6.31□□□□□ -1.4
USP48-215ENST00000534705 IGF2BP3O00425 579 aaKnown RBP eCLIP6.3□□□□□ -1.4
USP48-215ENST00000534705 PLCB3Q01970 1234 aa6.3□□□□□ -1.4
USP48-215ENST00000534705 PRR23BQ6ZRT6 265 aa6.3□□□□□ -1.4
USP48-215ENST00000534705 TOP6BLQ8N6T0 577 aa6.3□□□□□ -1.4
USP48-215ENST00000534705 WDR89Q96FK6 387 aaPredicted RBP6.3□□□□□ -1.4
USP48-215ENST00000534705 KRTAP9-3Q9BYQ3 159 aa6.3□□□□□ -1.4
USP48-215ENST00000534705 EHD4Q9H223 541 aa6.3□□□□□ -1.4
USP48-215ENST00000534705 SSU72Q9NP77 194 aaKnown RBP6.3□□□□□ -1.4
USP48-215ENST00000534705 TRAK1Q9UPV9 953 aa6.3□□□□□ -1.4
USP48-215ENST00000534705 PNMA6FA0A0J9YX94 578 aa6.29□□□□□ -1.4
USP48-215ENST00000534705 ZNF862O60290 1169 aa6.29□□□□□ -1.4
USP48-215ENST00000534705 TMEM253P0C7T8 217 aa6.29□□□□□ -1.4
USP48-215ENST00000534705 HCLS1P14317 486 aaPredicted RBP6.29□□□□□ -1.4
USP48-215ENST00000534705 CYFIP1Q7L576 1253 aa6.29□□□□□ -1.4
USP48-215ENST00000534705 FYB2Q5VWT5 728 aa6.28□□□□□ -1.4
USP48-215ENST00000534705 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.28□□□□□ -1.4
USP48-215ENST00000534705 HEXIM2Q96MH2 286 aaKnown RBP6.28□□□□□ -1.4
USP48-215ENST00000534705 PCDHGC5Q9Y5F6 944 aa6.28□□□□□ -1.4
USP48-215ENST00000534705 KRT1P04264 644 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 GSTP1P09211 210 aaKnown RBP6.27□□□□□ -1.41
USP48-215ENST00000534705 CLCN7P51798 805 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 CTSWP56202 376 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 FGD1P98174 961 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 GRM2Q14416 872 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 ALG1LQ6GMV1 187 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 CCDC120Q96HB5 630 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 ZC3H12CQ9C0D7 883 aaKnown RBP6.27□□□□□ -1.41
USP48-215ENST00000534705 ABCB6Q9NP58 842 aa6.27□□□□□ -1.41
USP48-215ENST00000534705 NPIPB6E9PJ23 425 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 GADD45BO75293 160 aaPredicted RBP6.26□□□□□ -1.41
USP48-215ENST00000534705 INHBBP09529 407 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 XRCC5P13010 732 aaKnown RBP6.26□□□□□ -1.41
USP48-215ENST00000534705 ERCC3P19447 782 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 ATP2B2Q01814 1243 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 CIAPIN1Q6FI81 312 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 DNAJC14Q6Y2X3 702 aaPredicted RBP6.26□□□□□ -1.41
USP48-215ENST00000534705 FAM214BQ7L5A3 538 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 SPACA3Q8IXA5 215 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 SRCIN1Q9C0H9 1055 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 NLRP2Q9NX02 1062 aa6.26□□□□□ -1.41
USP48-215ENST00000534705 GNAT3A8MTJ3 354 aa6.25□□□□□ -1.41
USP48-215ENST00000534705 GIPC1O14908 333 aa6.25□□□□□ -1.41
USP48-215ENST00000534705 P4HBP07237 508 aaKnown RBP6.25□□□□□ -1.41
USP48-215ENST00000534705 GDNFP39905 211 aa6.25□□□□□ -1.41
USP48-215ENST00000534705 KCNA10Q16322 511 aa6.25□□□□□ -1.41
USP48-215ENST00000534705 RNF214Q8ND24 703 aa6.25□□□□□ -1.41
USP48-215ENST00000534705 EPS8L3Q8TE67 593 aaKnown RBP6.25□□□□□ -1.41
USP48-215ENST00000534705 ISL2Q96A47 359 aa6.25□□□□□ -1.41
USP48-215ENST00000534705 CCDC180Q9P1Z9 1646 aa6.25□□□□□ -1.41
USP48-215ENST00000534705 TMEM238LA0A1B0GVL6 79 aa6.24□□□□□ -1.41
USP48-215ENST00000534705 ANKRD33BA6NCL7 494 aa6.24□□□□□ -1.41
USP48-215ENST00000534705 MAPK8P45983 427 aa6.24□□□□□ -1.41
USP48-215ENST00000534705 ERVK-24P63145 666 aa6.24□□□□□ -1.41
USP48-215ENST00000534705 PPP2R3AQ06190 1150 aa6.24□□□□□ -1.41
USP48-215ENST00000534705 FRMD6Q96NE9 622 aa6.24□□□□□ -1.41
USP48-215ENST00000534705 NSUN3Q9H649 340 aaKnown RBP6.24□□□□□ -1.41
USP48-215ENST00000534705 PITPNM2Q9BZ72 1349 aa6.24□□□□□ -1.41
USP48-215ENST00000534705 TCAF2A6NFQ2 919 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 NEFMP07197 916 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 NKPD1Q17RQ9 610 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 CCDC27Q2M243 656 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.23□□□□□ -1.41
USP48-215ENST00000534705 NPAS4Q8IUM7 802 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 ANKRD24Q8TF21 1146 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 DIRC2Q96SL1 478 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 GZF1Q9H116 711 aaPredicted RBP6.23□□□□□ -1.41
USP48-215ENST00000534705 PRDM10Q9NQV6 1147 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 PPP4R2Q9NY27 417 aa6.23□□□□□ -1.41
USP48-215ENST00000534705 ZBTB7CA1YPR0 619 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 PRPF40AO75400 957 aaKnown RBP6.22□□□□□ -1.41
USP48-215ENST00000534705 MED14OSP0DP75 135 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 ZNF157P51786 506 aaPredicted RBP6.22□□□□□ -1.41
USP48-215ENST00000534705 ZC3H12AQ5D1E8 599 aaKnown RBP6.22□□□□□ -1.41
USP48-215ENST00000534705 ATG14Q6ZNE5 492 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 KCNB2Q92953 911 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 KRTAP17-1Q9BYP8 105 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 BCO2Q9BYV7 579 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 EPB41L4BQ9H329 900 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 CD320Q9NPF0 282 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 SPG7Q9UQ90 795 aa6.22□□□□□ -1.41
USP48-215ENST00000534705 LDHBP07195 334 aaKnown RBP6.21□□□□□ -1.42
USP48-215ENST00000534705 FAAP100Q0VG06 881 aa6.21□□□□□ -1.42
USP48-215ENST00000534705 PI16Q6UXB8 463 aa6.21□□□□□ -1.42
USP48-215ENST00000534705 FOXQ1Q9C009 403 aa6.21□□□□□ -1.42
USP48-215ENST00000534705 CARS2Q9HA77 564 aaKnown RBP6.21□□□□□ -1.42
USP48-215ENST00000534705 DCP1AQ9NPI6 582 aaPredicted RBP6.21□□□□□ -1.42
USP48-215ENST00000534705 PPM1HQ9ULR3 514 aa6.21□□□□□ -1.42
USP48-215ENST00000534705 GLDCP23378 1020 aa6.2□□□□□ -1.42
USP48-215ENST00000534705 GSTT1P30711 240 aa6.2□□□□□ -1.42
USP48-215ENST00000534705 EAPPQ56P03 285 aaPredicted RBP6.2□□□□□ -1.42
USP48-215ENST00000534705 DTHD1Q6ZMT9 781 aa6.2□□□□□ -1.42
USP48-215ENST00000534705 RELTQ969Z4 430 aa6.2□□□□□ -1.42
USP48-215ENST00000534705 TMEM39AQ9NV64 488 aa6.2□□□□□ -1.42
USP48-215ENST00000534705 MAPK8IP1Q9UQF2 711 aa6.2□□□□□ -1.42
USP48-215ENST00000534705 HOXA5P20719 270 aa6.19□□□□□ -1.42
USP48-215ENST00000534705 GNA15P30679 374 aa6.19□□□□□ -1.42
USP48-215ENST00000534705 FCGRTP55899 365 aa6.19□□□□□ -1.42
USP48-215ENST00000534705 NXPE4Q6UWF7 544 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms