RNA–Protein interactions for RNA: ENST00000409952.3

LSM5-205, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-205ENST00000409952 ACAD11Q709F0 780 aa6.69□□□□□ -1.34
LSM5-205ENST00000409952 AGGF1Q8N302 714 aaeCLIP6.69□□□□□ -1.34
LSM5-205ENST00000409952 TP53INP1Q96A56 240 aa6.69□□□□□ -1.34
LSM5-205ENST00000409952 FAM46AQ96IP4 442 aaKnown RBP6.69□□□□□ -1.34
LSM5-205ENST00000409952 KRTAP4-12Q9BQ66 201 aa6.69□□□□□ -1.34
LSM5-205ENST00000409952 EHD4Q9H223 541 aa6.69□□□□□ -1.34
LSM5-205ENST00000409952 KANSL2Q9H9L4 492 aa6.69□□□□□ -1.34
LSM5-205ENST00000409952 KCNQ5Q9NR82 932 aa6.69□□□□□ -1.34
LSM5-205ENST00000409952 TMEM238LA0A1B0GVL6 79 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 ARL4DP49703 201 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 IFRD2Q12894 506 aaPredicted RBP6.68□□□□□ -1.34
LSM5-205ENST00000409952 PCNX4Q63HM2 1172 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 C16orf86Q6ZW13 317 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 CCAR1Q8IX12 1150 aaKnown RBP6.68□□□□□ -1.34
LSM5-205ENST00000409952 LILRB2Q8N423 598 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 C3orf58Q8NDZ4 430 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 JDP2Q8WYK2 163 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 DNAJC7Q99615 494 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 SRRTQ9BXP5 876 aaKnown RBP6.68□□□□□ -1.34
LSM5-205ENST00000409952 TMEM260Q9NX78 707 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 PPP4R2Q9NY27 417 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 TRAK1Q9UPV9 953 aa6.68□□□□□ -1.34
LSM5-205ENST00000409952 SUPT16HQ9Y5B9 1047 aaKnown RBP6.68□□□□□ -1.34
LSM5-205ENST00000409952 LOC100289279A0A1B0GTE1 492 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 F6X3S4 739 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 DLGAP3O95886 979 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 UVSSAQ2YD98 709 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 ARMC10Q8N2F6 343 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 PRPF38AQ8NAV1 312 aaKnown RBP6.67□□□□□ -1.34
LSM5-205ENST00000409952 ANKRD24Q8TF21 1146 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 SLC7A3Q8WY07 619 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 CCDC136Q96JN2 1154 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 RHOVQ96L33 236 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 FEZ1Q99689 392 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 TMPRSS13Q9BYE2 586 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 SUGCTQ9HAC7 445 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 PPM1HQ9ULR3 514 aa6.67□□□□□ -1.34
LSM5-205ENST00000409952 SMAD7O15105 426 aaKnown RBP6.66□□□□□ -1.34
LSM5-205ENST00000409952 MASP1P48740 699 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 NLRP12P59046 1061 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 FBXL19Q6PCT2 694 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 PRR23CQ6ZRP0 262 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 FMNL3Q8IVF7 1028 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 CCDC146Q8IYE0 955 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 SHDQ96IW2 340 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 TRIM56Q9BRZ2 755 aaKnown RBP6.66□□□□□ -1.34
LSM5-205ENST00000409952 KRTAP9-9Q9BYP9 154 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 KRTAP9-4Q9BYQ2 154 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 CEP41Q9BYV8 373 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 RNF208Q9H0X6 261 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 GABBR1Q9UBS5 961 aa6.66□□□□□ -1.34
LSM5-205ENST00000409952 GREM1O60565 184 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 TIAF1O95411 115 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 VIL1P09327 827 aaKnown RBP6.65□□□□□ -1.34
LSM5-205ENST00000409952 APOBRQ0VD83 1088 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 FAAP100Q0VG06 881 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 RASGRF1Q13972 1273 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 DDR2Q16832 855 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 ODR4Q5SWX8 454 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 ANKRD34AQ69YU3 496 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 FERMT3Q86UX7 667 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 CELF2-AS1Q8N7Q2 184 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 SMG8Q8ND04 991 aaKnown RBP6.65□□□□□ -1.34
LSM5-205ENST00000409952 CEP89Q96ST8 783 aa6.65□□□□□ -1.34
LSM5-205ENST00000409952 PDPK1O15530 556 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 EIF3JO75822 258 aaKnown RBP6.64□□□□□ -1.35
LSM5-205ENST00000409952 GLB1P16278 677 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 GARTP22102 1010 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 TBX4P57082 545 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 SQSTM1Q13501 440 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 PRSS36Q5K4E3 855 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.64□□□□□ -1.35
LSM5-205ENST00000409952 SV2BQ7L1I2 683 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 SLC51AQ86UW1 340 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 SMC5Q8IY18 1101 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 PHC3Q8NDX5 983 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 NKD1Q969G9 470 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 IER2Q9BTL4 223 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 RUSC1Q9BVN2 902 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 ZFYVE1Q9HBF4 777 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 GEMIN8Q9NWZ8 242 aaKnown RBP6.64□□□□□ -1.35
LSM5-205ENST00000409952 UBP1Q9NZI7 540 aa6.64□□□□□ -1.35
LSM5-205ENST00000409952 KRTAP4-8A0A0G2JLE6 195 aa6.63□□□□□ -1.35
LSM5-205ENST00000409952 HCLS1P14317 486 aaPredicted RBP6.63□□□□□ -1.35
LSM5-205ENST00000409952 GSTM4Q03013 218 aa6.63□□□□□ -1.35
LSM5-205ENST00000409952 FAM160A1Q05DH4 1040 aa6.63□□□□□ -1.35
LSM5-205ENST00000409952 MAP3K11Q16584 847 aa6.63□□□□□ -1.35
LSM5-205ENST00000409952 SNAP47Q5SQN1 464 aa6.63□□□□□ -1.35
LSM5-205ENST00000409952 MYRFLQ96LU7 910 aa6.63□□□□□ -1.35
LSM5-205ENST00000409952 SYNGAP1Q96PV0 1343 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 PRC1O43663 620 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 PF4P02776 101 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 CYP11A1P05108 521 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 CTSBP07858 339 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 LIG3P49916 1009 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 FCGRTP55899 365 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 LMNB2Q03252 620 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 C2orf27AQ580R0 203 aa6.62□□□□□ -1.35
LSM5-205ENST00000409952 EXOSC6Q5RKV6 272 aaKnown RBP6.62□□□□□ -1.35
LSM5-205ENST00000409952 TMED8Q6PL24 325 aaPredicted RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms