RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 CUL5Q93034 780 aa10.58□□□□□ -0.72
PTPRA-204ENST00000380393 PLEKHF1Q96S99 279 aa10.58□□□□□ -0.72
PTPRA-204ENST00000380393 SPATA7Q9P0W8 599 aa10.58□□□□□ -0.72
PTPRA-204ENST00000380393 MYO1AQ9UBC5 1043 aa10.58□□□□□ -0.72
PTPRA-204ENST00000380393 U3KPZ7 1027 aaPredicted RBP10.58□□□□□ -0.72
PTPRA-204ENST00000380393 KRT85P78386 507 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 CHD2O14647 1828 aaKnown RBP10.57□□□□□ -0.72
PTPRA-204ENST00000380393 XRN1Q8IZH2 1706 aaKnown RBP10.57□□□□□ -0.72
PTPRA-204ENST00000380393 CYP11B2P19099 503 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 EIF4BP23588 611 aaKnown RBP10.57□□□□□ -0.72
PTPRA-204ENST00000380393 NEXNQ0ZGT2 675 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 KRT24Q2M2I5 525 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 C16orf87Q6PH81 154 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 DIP2AQ14689 1571 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 SMAPO00193 183 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 ZNF280DQ6N043 979 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 MTHFD1LQ6UB35 978 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 RBM43Q6ZSC3 357 aaKnown RBP10.57□□□□□ -0.72
PTPRA-204ENST00000380393 TMEM110Q86TL2 294 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 FUKQ8N0W3 1084 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 MSANTD4Q8NCY6 345 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 RASSF8Q8NHQ8 419 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 DCTPP1Q9H773 170 aa10.57□□□□□ -0.72
PTPRA-204ENST00000380393 STRCQ7RTU9 1775 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 C8orf58Q8NAV2 365 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 CCDC12Q8WUD4 166 aaPredicted RBP10.56□□□□□ -0.72
PTPRA-204ENST00000380393 HDAC6Q9UBN7 1215 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 PIK3R4Q99570 1358 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 AARSP49588 968 aaKnown RBP eCLIP10.56□□□□□ -0.72
PTPRA-204ENST00000380393 CEBPZQ03701 1054 aaKnown RBP10.56□□□□□ -0.72
PTPRA-204ENST00000380393 CDC37Q16543 378 aaPredicted RBP10.56□□□□□ -0.72
PTPRA-204ENST00000380393 API5Q9BZZ5 524 aaKnown RBP10.56□□□□□ -0.72
PTPRA-204ENST00000380393 STRCP1A6NGW2 1772 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 IQSEC2Q5JU85 1478 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 FAM83GA6ND36 823 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 B4DLN1 442 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 MAP4K4O95819 1239 aaPredicted RBP10.56□□□□□ -0.72
PTPRA-204ENST00000380393 LINGO3P0C6S8 592 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 CA8P35219 290 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 DEUP1Q05D60 604 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 STX1AQ16623 288 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 BRAPQ7Z569 592 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 PHACTR3Q96KR7 559 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 C19orf44Q9H6X5 657 aa10.56□□□□□ -0.72
PTPRA-204ENST00000380393 KNDC1Q76NI1 1749 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 PLEKHG3A1L390 1219 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 VWA3AA6NCI4 1184 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 CREB3O43889 395 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 ATF3P18847 181 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 Q4G0T1 1027 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 SMARCC2Q8TAQ2 1214 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 STAMBPL1Q96FJ0 436 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 GRIN2DO15399 1336 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 CPSF1Q10570 1443 aaKnown RBP10.55□□□□□ -0.72
PTPRA-204ENST00000380393 NR1I2O75469 434 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 G3BP1Q13283 466 aaKnown RBP eCLIP10.55□□□□□ -0.72
PTPRA-204ENST00000380393 MYBPC3Q14896 1274 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 AOPEPQ8N6M6 819 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 DDX54Q8TDD1 881 aaKnown RBP10.55□□□□□ -0.72
PTPRA-204ENST00000380393 FBXW7Q969H0 707 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 ACSBG1Q96GR2 724 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 MBIPQ9NS73 344 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 HAUS2Q9NVX0 235 aa10.55□□□□□ -0.72
PTPRA-204ENST00000380393 LRRC10BA6NIK2 292 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 CUTAO60888 179 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 NLRP6P59044 892 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 GALNT15Q8N3T1 639 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 ABTB2Q8N961 1025 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 RUFY1Q96T51 708 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 XPO4Q9C0E2 1151 aaKnown RBP10.54□□□□□ -0.72
PTPRA-204ENST00000380393 VIPAS39Q9H9C1 493 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 MTMR6Q9Y217 621 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 NPHP3Q7Z494 1330 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 USP32Q8NFA0 1604 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 NALCNQ8IZF0 1738 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 YTHDF3Q7Z739 585 aaKnown RBP10.54□□□□□ -0.72
PTPRA-204ENST00000380393 FAM81BQ96LP2 452 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 MEIS3Q99687 375 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 AATFQ9NY61 560 aaKnown RBP eCLIP10.54□□□□□ -0.72
PTPRA-204ENST00000380393 IFNKQ9P0W0 207 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 IFT88Q13099 833 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 CDC37L1Q7L3B6 337 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 FERMT3Q86UX7 667 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 CCDC170Q8IYT3 715 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 COG3Q96JB2 828 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 AGAP3Q96P47 875 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 BAIAP2L1Q9UHR4 511 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 PPP2R2CQ9Y2T4 447 aa10.54□□□□□ -0.72
PTPRA-204ENST00000380393 GGCXP38435 758 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 CTCFP49711 727 aaPredicted RBP10.53□□□□□ -0.72
PTPRA-204ENST00000380393 SLC7A5Q01650 507 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 IFFO1Q0D2I5 559 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 STIM1Q13586 685 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 CCDC57Q2TAC2 916 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 FAM173BQ6P4H8 233 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 ELOA2Q8IYF1 753 aaPredicted RBP10.53□□□□□ -0.72
PTPRA-204ENST00000380393 NUP58Q9BVL2 599 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 NACA2Q9H009 215 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 A0A087WWV3 80 aa10.53□□□□□ -0.72
PTPRA-204ENST00000380393 IPO5O00410 1097 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms