RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 TRIM34Q9BYJ4 488 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 TACC3Q9Y6A5 838 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 TRIM66O15016 1216 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 CUTAO60888 179 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 N4BP1O75113 896 aaKnown RBP21.12■□□□□ 0.97
CCDC3-201ENST00000378825 MCM6Q14566 821 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 TJP1Q07157 1748 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 ERVV-2B6SEH9 535 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 LMAN1P49257 510 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 NR5A1Q13285 461 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 KLHL10Q6JEL2 608 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 PNKPQ96T60 521 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 ADAM21Q9UKJ8 722 aa21.12■□□□□ 0.97
CCDC3-201ENST00000378825 GOLGA8AA7E2F4 631 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 ZBTB43O43298 467 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 IDH1O75874 414 aaKnown RBP21.11■□□□□ 0.97
CCDC3-201ENST00000378825 CIAO1O76071 339 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 ZSCAN26Q16670 478 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 KRI1Q8N9T8 703 aaKnown RBP21.11■□□□□ 0.97
CCDC3-201ENST00000378825 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.11■□□□□ 0.97
CCDC3-201ENST00000378825 PCDHB6Q9Y5E3 794 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 MYO5AQ9Y4I1 1855 aaKnown RBP21.11■□□□□ 0.97
CCDC3-201ENST00000378825 DDX60Q8IY21 1712 aaKnown RBP21.11■□□□□ 0.97
CCDC3-201ENST00000378825 ZFYP08048 801 aaPredicted RBP21.11■□□□□ 0.97
CCDC3-201ENST00000378825 IGDCC4Q8TDY8 1250 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 RABGGTAQ92696 567 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 ZKSCAN3Q9BRR0 538 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 SLAIN2Q9P270 581 aa21.11■□□□□ 0.97
CCDC3-201ENST00000378825 TPM1P09493 284 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 SMYD4Q8IYR2 804 aaPredicted RBP21.1■□□□□ 0.97
CCDC3-201ENST00000378825 GOLGA1Q92805 767 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 ANKZF1Q9H8Y5 726 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 PIH1D3Q9NQM4 214 aaKnown RBP21.1■□□□□ 0.97
CCDC3-201ENST00000378825 RAI14Q9P0K7 980 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 ASAP1Q9ULH1 1129 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 ECM29Q5VYK3 1845 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 CTDSPL2Q05D32 466 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 CCDC191Q8NCU4 936 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 LY9Q9HBG7 655 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 PDE11AQ9HCR9 933 aa21.1■□□□□ 0.97
CCDC3-201ENST00000378825 TXLNAP40222 546 aa21.09■□□□□ 0.97
CCDC3-201ENST00000378825 TXLNBQ8N3L3 684 aa21.09■□□□□ 0.97
CCDC3-201ENST00000378825 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.09■□□□□ 0.97
CCDC3-201ENST00000378825 FBXO2Q9UK22 296 aaPredicted RBP21.09■□□□□ 0.97
CCDC3-201ENST00000378825 COL5A2P05997 1499 aaPredicted RBP21.09■□□□□ 0.97
CCDC3-201ENST00000378825 RBL2Q08999 1139 aa21.09■□□□□ 0.97
CCDC3-201ENST00000378825 TRIM29Q14134 588 aa21.09■□□□□ 0.97
CCDC3-201ENST00000378825 TMEM67Q5HYA8 995 aa21.09■□□□□ 0.97
CCDC3-201ENST00000378825 OXER1Q8TDS5 423 aa21.09■□□□□ 0.97
CCDC3-201ENST00000378825 CHMP4BP1P59074 171 aa21.08■□□□□ 0.97
CCDC3-201ENST00000378825 NR1I3Q14994 352 aa21.08■□□□□ 0.97
CCDC3-201ENST00000378825 TAF7LQ5H9L4 462 aa21.08■□□□□ 0.97
CCDC3-201ENST00000378825 NOSTRINQ8IVI9 506 aa21.08■□□□□ 0.97
CCDC3-201ENST00000378825 DNAJC10Q8IXB1 793 aa21.08■□□□□ 0.97
CCDC3-201ENST00000378825 DIS3L2Q8IYB7 885 aaKnown RBP21.08■□□□□ 0.97
CCDC3-201ENST00000378825 WWC3Q9ULE0 1092 aa21.08■□□□□ 0.97
CCDC3-201ENST00000378825 FAM205CA6NFA0 338 aa21.08■□□□□ 0.96
CCDC3-201ENST00000378825 ATP8B1O43520 1251 aa21.08■□□□□ 0.96
CCDC3-201ENST00000378825 CD44P16070 742 aaKnown RBP21.08■□□□□ 0.96
CCDC3-201ENST00000378825 ADD2P35612 726 aa21.08■□□□□ 0.96
CCDC3-201ENST00000378825 MORC3Q14149 939 aa21.08■□□□□ 0.96
CCDC3-201ENST00000378825 ZNF335Q9H4Z2 1342 aaPredicted RBP21.08■□□□□ 0.96
CCDC3-201ENST00000378825 GPTP24298 496 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 APTXQ7Z2E3 356 aaKnown RBP21.07■□□□□ 0.96
CCDC3-201ENST00000378825 CARD10Q9BWT7 1032 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 TMOD3Q9NYL9 352 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 ADGRG1Q9Y653 693 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 KCPQ6ZWJ8 1503 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 A0A087X0B3 334 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 RHOXF2BP0C7M4 288 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 SARSP49591 514 aaKnown RBP21.07■□□□□ 0.96
CCDC3-201ENST00000378825 ENOX1Q8TC92 643 aaKnown RBP21.07■□□□□ 0.96
CCDC3-201ENST00000378825 CDC5LQ99459 802 aaKnown RBP21.07■□□□□ 0.96
CCDC3-201ENST00000378825 RHOXF2Q9BQY4 288 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 ZSWIM5Q9P217 1185 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 ZNF532Q9HCE3 1301 aa21.07■□□□□ 0.96
CCDC3-201ENST00000378825 CDKL5O76039 1030 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 AFMP43652 599 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 FOXR1Q6PIV2 292 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 VPS18Q9P253 973 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 KAT6BQ8WYB5 2073 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 ZNF569Q5MCW4 686 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 C10orf67Q8IYJ2 551 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 ACRBPQ8NEB7 543 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 MAP2K7O14733 419 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 CCDC175P0C221 793 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 CDC25AP30304 524 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 CPLX2Q6PUV4 134 aaKnown RBP21.06■□□□□ 0.96
CCDC3-201ENST00000378825 PLCD3Q8N3E9 789 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 STAMQ92783 540 aa21.06■□□□□ 0.96
CCDC3-201ENST00000378825 SPEF2Q9C093 1822 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 GOLGA6L9A6NEM1 432 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 AKR1B15C9JRZ8 316 aaPredicted RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 SNAP23O00161 211 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 ACTN4O43707 911 aaKnown RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 PTPREP23469 700 aa21.05■□□□□ 0.96
CCDC3-201ENST00000378825 NKX1-1Q15270 411 aaPredicted RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 RRP12Q5JTH9 1297 aaKnown RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 BEND6Q5SZJ8 279 aaPredicted RBP21.05■□□□□ 0.96
CCDC3-201ENST00000378825 SRGAP1Q7Z6B7 1085 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms