RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 PifoQ9D9W1 207 aa9.57□□□□□ -0.88
Trim56-201ENSMUST00000054384 P01660 111 aa9.57□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ndufa4Q62425 82 aaKnown RBP9.57□□□□□ -0.88
Trim56-201ENSMUST00000054384 COA4Q8BT51 87 aa9.57□□□□□ -0.88
Trim56-201ENSMUST00000054384 Lect2O88803 151 aa9.57□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ube2e1P52482 193 aa9.57□□□□□ -0.88
Trim56-201ENSMUST00000054384 Tcl1b2P56841 117 aa9.57□□□□□ -0.88
Trim56-201ENSMUST00000054384 Gm28778A0A087WSK7 233 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ndufa1O35683 70 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Tet2Q4JK59 1912 aaKnown RBP9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Foxl2O88470 375 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Wipf2Q6PEV3 440 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Wfdc9Q3UW41 83 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Tmem263Q9DAM7 115 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ccl21aP84444 133 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ccl21bP86792 133 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ccl21cP86793 133 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Gm10384Q3UQ87 92 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Trav14-3A0A075B607 120 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 P01786 117 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 A930003A15RikQ3U552 87 aa9.56□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ang5Q5GAN1 145 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ncor1Q60974 2453 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 GlrxQ9QUH0 107 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 Brwd1Q921C3 2304 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ly6c1P0CW02 131 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 Olfr313Q5NC55 308 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 Gm7257D3YX25 99 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 BC035044E0CXF8 138 aa9.55□□□□□ -0.88
Trim56-201ENSMUST00000054384 Zfp11P10751 647 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Rmi2Q3UPE3 149 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Dpm3Q9D1Q4 92 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Igkv9-123A0A140T8N8 117 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ndufa12Q7TMF3 145 aaKnown RBP9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Prdm6Q3UZD5 596 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Il22ra2Q80XF5 230 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ifitm1Q9D103 106 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Olfr312Q7TRZ9 308 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Spink10Q8CAC8 162 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Fam110dQ80X91 271 aa9.54□□□□□ -0.88
Trim56-201ENSMUST00000054384 Tomm6Q9CQN3 74 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Colca2F8VPY8 239 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 P01790 122 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Notch4P31695 1964 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 4930447F04RikA2AFR2 126 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 P06330 118 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Ube2bP63147 152 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Lyg1Q9D7Q0 197 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Klk11Q9QYN3 276 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Cela2aP05208 271 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Klhdc3Q8VEM9 382 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Gm12830F6XVH0 157 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 SvipQ3UZP4 77 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 BC048562Q80ZQ7 204 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 SprnQ8BWU1 147 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 PpbpQ9EQI5 113 aa9.53□□□□□ -0.88
Trim56-201ENSMUST00000054384 Id3P41133 119 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 Rhno1Q8K3A4 235 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 P01739 132 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 3110021N24RikJ3QMN2 152 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 Igkv8-26A0A075B5N5 123 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 Igll1P20764 209 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 Ighv8-2A0A0A6YW58 119 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 Tmem14cQ9CQN6 114 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 Ly6g6dQ9Z1Q3 135 aa9.52□□□□□ -0.89
Trim56-201ENSMUST00000054384 Defb29Q8BGW9 78 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 A730015C16RikQ8C992 119 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 P01792 123 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 Gm20499D3Z4G5 72 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 P18528 98 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 Edn3P48299 214 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 BikO70337 150 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 Col5a3Q9JLI2 1739 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 Ly6g5bQ8K1T4 194 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 Plscr4P58196 326 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 Brk1Q91VR8 75 aa9.51□□□□□ -0.89
Trim56-201ENSMUST00000054384 Ccl25O35903 144 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Zc2hc1bQ9D534 172 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Igkv2-137A0A0B4J1H6 120 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Mustn1Q99JI1 82 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Spata25Q9DA57 226 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Slc25a48Q8BW66 306 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Reg3gO09049 174 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Gm10192Q3V0S1 108 aa9.5□□□□□ -0.89
Trim56-201ENSMUST00000054384 Ighv1-62-2A0A0A6YXZ4 119 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Q80X32 188 aaKnown RBP9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Fhl4Q8CDC8 279 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 GfyJ3KML8 504 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 SelenowP63300 88 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Igkv1-122A0A140T8M9 119 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Erdr1J3QMM0 206 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Inafm1E9PV59 130 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 P01837 106 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Nbl1Q61477 178 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Slc25a29Q8BL03 306 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Prok1Q14A28 105 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Tmem210Q9D2F0 147 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Dopey1Q8BL99 2399 aa9.49□□□□□ -0.89
Trim56-201ENSMUST00000054384 Gm15128A2ADW8 449 aa9.48□□□□□ -0.89
Trim56-201ENSMUST00000054384 P01789 122 aa9.48□□□□□ -0.89
Retrieved 100 of 22,080 RNA–protein pairs in 135.5 ms