RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 KRTAP4-7Q9BYR0 210 aa1.27□□□□□ -2.21
SCN1A-220ENST00000641603 KRTAP9-6A0A140TA67 174 aa1.27□□□□□ -2.21
SCN1A-220ENST00000641603 KRTAP6-3Q3LI67 103 aa1.26□□□□□ -2.21
SCN1A-220ENST00000641603 KRTAP9-2Q9BYQ4 174 aa1.26□□□□□ -2.21
SCN1A-220ENST00000641603 KRTAP20-1Q3LI63 56 aa1.26□□□□□ -2.21
SCN1A-220ENST00000641603 KMT2CQ8NEZ4 4911 aaKnown RBP1.26□□□□□ -2.21
SCN1A-220ENST00000641603 KRTAP6-2Q3LI66 62 aa1.26□□□□□ -2.21
SCN1A-220ENST00000641603 LCE2AQ5TA79 106 aaPredicted RBP1.26□□□□□ -2.21
SCN1A-220ENST00000641603 RYR2Q92736 4967 aa1.26□□□□□ -2.21
SCN1A-220ENST00000641603 KRTAP2-2Q9BYT5 123 aa1.24□□□□□ -2.21
SCN1A-220ENST00000641603 MUC17Q685J3 4493 aa1.23□□□□□ -2.21
SCN1A-220ENST00000641603 ABCA13Q86UQ4 5058 aa1.23□□□□□ -2.21
SCN1A-220ENST00000641603 KRTAP9-4Q9BYQ2 154 aa1.21□□□□□ -2.22
SCN1A-220ENST00000641603 LCE5AQ5TCM9 118 aa1.19□□□□□ -2.22
SCN1A-220ENST00000641603 KRTAP9-7A8MTY7 169 aa1.18□□□□□ -2.22
SCN1A-220ENST00000641603 LOC100996750A0A140TA64 210 aa1.18□□□□□ -2.22
SCN1A-220ENST00000641603 RNF213Q63HN8 5207 aa1.17□□□□□ -2.22
SCN1A-220ENST00000641603 KIAA1109Q2LD37 5005 aa1.16□□□□□ -2.22
SCN1A-220ENST00000641603 KRTAP6-1Q3LI64 71 aa1.16□□□□□ -2.22
SCN1A-220ENST00000641603 SSPOA2VEC9 5147 aa1.14□□□□□ -2.23
SCN1A-220ENST00000641603 KRTAP4-3Q9BYR4 195 aa1.13□□□□□ -2.23
SCN1A-220ENST00000641603 BIRC6Q9NR09 4857 aa1.12□□□□□ -2.23
SCN1A-220ENST00000641603 KRTAP4-9Q9BYQ8 210 aa1.12□□□□□ -2.23
SCN1A-220ENST00000641603 LCE1DQ5T752 114 aa1.12□□□□□ -2.23
SCN1A-220ENST00000641603 HMCN2Q8NDA2 5059 aa1.12□□□□□ -2.23
SCN1A-220ENST00000641603 KRTAP9-9Q9BYP9 154 aa1.11□□□□□ -2.23
SCN1A-220ENST00000641603 FAT4Q6V0I7 4981 aa1.1□□□□□ -2.23
SCN1A-220ENST00000641603 LCE1BQ5T7P3 118 aa1.1□□□□□ -2.23
SCN1A-220ENST00000641603 HERC2O95714 4834 aa1.09□□□□□ -2.23
SCN1A-220ENST00000641603 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.09□□□□□ -2.24
SCN1A-220ENST00000641603 USH2AO75445 5202 aa1.08□□□□□ -2.24
SCN1A-220ENST00000641603 MT4P47944 62 aa1.07□□□□□ -2.24
SCN1A-220ENST00000641603 MUC2Q02817 5179 aa1.07□□□□□ -2.24
SCN1A-220ENST00000641603 SYNE1Q8NF91 8797 aaKnown RBP1.06□□□□□ -2.24
SCN1A-220ENST00000641603 AHNAKQ09666 5890 aaKnown RBP1.06□□□□□ -2.24
SCN1A-220ENST00000641603 KRTAP5-9P26371 169 aa1.05□□□□□ -2.24
SCN1A-220ENST00000641603 LRP2P98164 4655 aa1.05□□□□□ -2.24
SCN1A-220ENST00000641603 SYNE2Q8WXH0 6885 aaKnown RBP1.04□□□□□ -2.24
SCN1A-220ENST00000641603 KRTAP5-5Q701N2 237 aaPredicted RBP1.03□□□□□ -2.24
SCN1A-220ENST00000641603 LCE1CQ5T751 118 aa1.02□□□□□ -2.25
SCN1A-220ENST00000641603 LCE1EQ5T753 118 aa1.02□□□□□ -2.25
SCN1A-220ENST00000641603 LCE1FQ5T754 118 aa1.02□□□□□ -2.25
SCN1A-220ENST00000641603 FSIP2Q5CZC0 6907 aa1.02□□□□□ -2.25
SCN1A-220ENST00000641603 NEBP20929 6669 aa0.98□□□□□ -2.25
SCN1A-220ENST00000641603 OBSCNQ5VST9 7968 aa0.98□□□□□ -2.25
SCN1A-220ENST00000641603 KMT2DO14686 5537 aa0.97□□□□□ -2.25
SCN1A-220ENST00000641603 LPAP08519 4548 aa0.97□□□□□ -2.25
SCN1A-220ENST00000641603 KRTAP5-2Q701N4 177 aa0.96□□□□□ -2.26
SCN1A-220ENST00000641603 KRTAP4-11Q9BYQ6 195 aa0.96□□□□□ -2.26
SCN1A-220ENST00000641603 MUC5BQ9HC84 5762 aaPredicted RBP0.95□□□□□ -2.26
SCN1A-220ENST00000641603 KRTAP5-4Q6L8H1 288 aa0.94□□□□□ -2.26
SCN1A-220ENST00000641603 GPR98Q8WXG9 6306 aa0.92□□□□□ -2.26
SCN1A-220ENST00000641603 MUC5ACP98088 5654 aa0.9□□□□□ -2.27
SCN1A-220ENST00000641603 AHNAK2Q8IVF2 5795 aa0.89□□□□□ -2.27
SCN1A-220ENST00000641603 KRTAP20-2Q3LI61 65 aa0.88□□□□□ -2.27
SCN1A-220ENST00000641603 DSTQ03001 7570 aaKnown RBP0.88□□□□□ -2.27
SCN1A-220ENST00000641603 MDN1Q9NU22 5596 aa0.87□□□□□ -2.27
SCN1A-220ENST00000641603 MACF1Q9UPN3 7388 aaKnown RBP0.85□□□□□ -2.27
SCN1A-220ENST00000641603 KRTAP5-10Q6L8G5 202 aa0.83□□□□□ -2.28
SCN1A-220ENST00000641603 KRTAP5-3Q6L8H2 238 aa0.81□□□□□ -2.28
SCN1A-220ENST00000641603 KRTAP21-1Q3LI58 79 aa0.78□□□□□ -2.29
SCN1A-220ENST00000641603 MUC12Q9UKN1 5478 aa0.77□□□□□ -2.29
SCN1A-220ENST00000641603 KRTAP4-6Q9BYQ5 205 aa0.75□□□□□ -2.29
SCN1A-220ENST00000641603 HMCN1Q96RW7 5635 aa0.75□□□□□ -2.29
SCN1A-220ENST00000641603 FCGBPQ9Y6R7 5405 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-220ENST00000641603 MUC19Q7Z5P9 8384 aa0.74□□□□□ -2.29
SCN1A-220ENST00000641603 KRTAP5-8O75690 187 aa0.73□□□□□ -2.29
SCN1A-220ENST00000641603 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.72□□□□□ -2.29
SCN1A-220ENST00000641603 KRTAP5-11Q6L8G4 156 aa0.72□□□□□ -2.29
SCN1A-220ENST00000641603 KRTAP4-4Q9BYR3 166 aa0.72□□□□□ -2.29
SCN1A-220ENST00000641603 KRTAP5-1Q6L8H4 278 aa0.71□□□□□ -2.3
SCN1A-220ENST00000641603 KRTAP4-12Q9BQ66 201 aa0.68□□□□□ -2.3
SCN1A-220ENST00000641603 KRTAP4-2Q9BYR5 136 aa0.68□□□□□ -2.3
SCN1A-220ENST00000641603 KRTAP5-7Q6L8G8 165 aa0.66□□□□□ -2.3
SCN1A-220ENST00000641603 KRTAP21-2Q3LI59 83 aa0.65□□□□□ -2.31
SCN1A-220ENST00000641603 PHGR1C9JFL3 82 aa0.64□□□□□ -2.31
SCN1A-220ENST00000641603 MUC16Q8WXI7 14507 aa0.52□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 85.6 ms