RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 KRTAP2-4Q9BYR9 128 aa5.04□□□□□ -1.6
CLN3-253ENST00000636977 KRTAP2-1Q9BYU5 128 aa5.04□□□□□ -1.6
CLN3-253ENST00000636977 FCGBPQ9Y6R7 5405 aaPredicted RBP5.04□□□□□ -1.6
CLN3-253ENST00000636977 KRTAP19-6Q3LI70 58 aa5.03□□□□□ -1.6
CLN3-253ENST00000636977 KRTAP4-3Q9BYR4 195 aa5.01□□□□□ -1.61
CLN3-253ENST00000636977 MUC12Q9UKN1 5478 aa4.99□□□□□ -1.61
CLN3-253ENST00000636977 LOC100996750A0A140TA64 210 aa4.97□□□□□ -1.61
CLN3-253ENST00000636977 KRTAP19-4Q3LI73 84 aa4.9□□□□□ -1.63
CLN3-253ENST00000636977 MT1GP13640 62 aa4.88□□□□□ -1.63
CLN3-253ENST00000636977 CRCT1Q9UGL9 99 aa4.83□□□□□ -1.64
CLN3-253ENST00000636977 MT1MQ8N339 61 aa4.82□□□□□ -1.64
CLN3-253ENST00000636977 DSTQ03001 7570 aaKnown RBP4.81□□□□□ -1.64
CLN3-253ENST00000636977 KRTAP19-3Q7Z4W3 81 aa4.8□□□□□ -1.64
CLN3-253ENST00000636977 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
CLN3-253ENST00000636977 SPRR2FQ96RM1 72 aa4.68□□□□□ -1.66
CLN3-253ENST00000636977 MACF1Q9UPN3 7388 aaKnown RBP4.66□□□□□ -1.66
CLN3-253ENST00000636977 LCE5AQ5TCM9 118 aa4.64□□□□□ -1.67
CLN3-253ENST00000636977 SYNE2Q8WXH0 6885 aaKnown RBP4.56□□□□□ -1.68
CLN3-253ENST00000636977 KRTAP9-7A8MTY7 169 aa4.55□□□□□ -1.68
CLN3-253ENST00000636977 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.53□□□□□ -1.68
CLN3-253ENST00000636977 MDN1Q9NU22 5596 aa4.51□□□□□ -1.69
CLN3-253ENST00000636977 LCE3BQ5TA77 95 aa4.51□□□□□ -1.69
CLN3-253ENST00000636977 KRTAP4-9Q9BYQ8 210 aa4.49□□□□□ -1.69
CLN3-253ENST00000636977 SYNE1Q8NF91 8797 aaKnown RBP4.46□□□□□ -1.7
CLN3-253ENST00000636977 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
CLN3-253ENST00000636977 LCE1AQ5T7P2 110 aa4.34□□□□□ -1.71
CLN3-253ENST00000636977 MT1AP04731 61 aa4.29□□□□□ -1.72
CLN3-253ENST00000636977 PRM1P04553 51 aa4.26□□□□□ -1.73
CLN3-253ENST00000636977 KRTAP5-9P26371 169 aa4.26□□□□□ -1.73
CLN3-253ENST00000636977 OBSCNQ5VST9 7968 aa4.25□□□□□ -1.73
CLN3-253ENST00000636977 KRTAP5-5Q701N2 237 aaPredicted RBP4.24□□□□□ -1.73
CLN3-253ENST00000636977 SPRR2EP22531 72 aa4.23□□□□□ -1.73
CLN3-253ENST00000636977 SPRR2BP35325 72 aa4.23□□□□□ -1.73
CLN3-253ENST00000636977 SPRR2AP35326 72 aa4.23□□□□□ -1.73
CLN3-253ENST00000636977 KRTAP6-3Q3LI67 103 aa4.19□□□□□ -1.74
CLN3-253ENST00000636977 LCE3DQ9BYE3 92 aa4.18□□□□□ -1.74
CLN3-253ENST00000636977 KRTAP2-2Q9BYT5 123 aa4.15□□□□□ -1.74
CLN3-253ENST00000636977 LCE3EQ5T5B0 92 aa4.11□□□□□ -1.75
CLN3-253ENST00000636977 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
CLN3-253ENST00000636977 SPRR2DP22532 72 aa4.03□□□□□ -1.76
CLN3-253ENST00000636977 KRTAP20-1Q3LI63 56 aa4□□□□□ -1.77
CLN3-253ENST00000636977 NEBP20929 6669 aa3.99□□□□□ -1.77
CLN3-253ENST00000636977 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
CLN3-253ENST00000636977 KRTAP6-2Q3LI66 62 aa3.96□□□□□ -1.78
CLN3-253ENST00000636977 MT3P25713 68 aa3.83□□□□□ -1.8
CLN3-253ENST00000636977 LCE1FQ5T754 118 aa3.83□□□□□ -1.8
CLN3-253ENST00000636977 LCE1DQ5T752 114 aa3.79□□□□□ -1.8
CLN3-253ENST00000636977 KRTAP5-4Q6L8H1 288 aa3.69□□□□□ -1.82
CLN3-253ENST00000636977 KRTAP4-6Q9BYQ5 205 aa3.68□□□□□ -1.82
CLN3-253ENST00000636977 MT4P47944 62 aa3.63□□□□□ -1.83
CLN3-253ENST00000636977 GPR98Q8WXG9 6306 aa3.62□□□□□ -1.83
CLN3-253ENST00000636977 MUC5BQ9HC84 5762 aaPredicted RBP3.58□□□□□ -1.84
CLN3-253ENST00000636977 KRTAP9-9Q9BYP9 154 aa3.57□□□□□ -1.84
CLN3-253ENST00000636977 LCE4AQ5TA78 99 aa3.54□□□□□ -1.84
CLN3-253ENST00000636977 KRTAP20-2Q3LI61 65 aa3.51□□□□□ -1.85
CLN3-253ENST00000636977 KRTAP5-2Q701N4 177 aa3.45□□□□□ -1.86
CLN3-253ENST00000636977 HMCN1Q96RW7 5635 aa3.45□□□□□ -1.86
CLN3-253ENST00000636977 MUC19Q7Z5P9 8384 aa3.35□□□□□ -1.87
CLN3-253ENST00000636977 KRTAP5-3Q6L8H2 238 aa3.33□□□□□ -1.88
CLN3-253ENST00000636977 MUC5ACP98088 5654 aa3.33□□□□□ -1.88
CLN3-253ENST00000636977 AHNAKQ09666 5890 aaKnown RBP3.26□□□□□ -1.89
CLN3-253ENST00000636977 KRTAP4-11Q9BYQ6 195 aa3.23□□□□□ -1.89
CLN3-253ENST00000636977 KRTAP5-7Q6L8G8 165 aa3.22□□□□□ -1.89
CLN3-253ENST00000636977 LCE1BQ5T7P3 118 aa3.19□□□□□ -1.9
CLN3-253ENST00000636977 KRTAP5-10Q6L8G5 202 aa3.16□□□□□ -1.9
CLN3-253ENST00000636977 AHNAK2Q8IVF2 5795 aa3.12□□□□□ -1.91
CLN3-253ENST00000636977 KRTAP4-2Q9BYR5 136 aa3.03□□□□□ -1.93
CLN3-253ENST00000636977 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
CLN3-253ENST00000636977 KRTAP5-1Q6L8H4 278 aa3□□□□□ -1.93
CLN3-253ENST00000636977 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
CLN3-253ENST00000636977 KRTAP21-2Q3LI59 83 aa2.83□□□□□ -1.96
CLN3-253ENST00000636977 KRTAP5-8O75690 187 aa2.77□□□□□ -1.97
CLN3-253ENST00000636977 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.76□□□□□ -1.97
CLN3-253ENST00000636977 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
CLN3-253ENST00000636977 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
CLN3-253ENST00000636977 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
CLN3-253ENST00000636977 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
CLN3-253ENST00000636977 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 104.1 ms