RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 SACSQ9NZJ4 4579 aa1.68□□□□□ -2.14
SCN1A-209ENST00000635750 FAT3Q8TDW7 4589 aa1.68□□□□□ -2.14
SCN1A-209ENST00000635750 MT1MQ8N339 61 aa1.67□□□□□ -2.14
SCN1A-209ENST00000635750 FAT4Q6V0I7 4981 aa1.66□□□□□ -2.14
SCN1A-209ENST00000635750 BIRC6Q9NR09 4857 aa1.66□□□□□ -2.14
SCN1A-209ENST00000635750 KRTAP19-6Q3LI70 58 aa1.66□□□□□ -2.14
SCN1A-209ENST00000635750 SSPOA2VEC9 5147 aa1.65□□□□□ -2.14
SCN1A-209ENST00000635750 KRTAP9-6A0A140TA67 174 aa1.65□□□□□ -2.14
SCN1A-209ENST00000635750 HERC2O95714 4834 aa1.65□□□□□ -2.15
SCN1A-209ENST00000635750 LCE1CQ5T751 118 aa1.64□□□□□ -2.15
SCN1A-209ENST00000635750 LCE1EQ5T753 118 aa1.64□□□□□ -2.15
SCN1A-209ENST00000635750 LCE1FQ5T754 118 aa1.64□□□□□ -2.15
SCN1A-209ENST00000635750 LCE1AQ5T7P2 110 aa1.64□□□□□ -2.15
SCN1A-209ENST00000635750 KRTAP4-7Q9BYR0 210 aa1.64□□□□□ -2.15
SCN1A-209ENST00000635750 KRTAP9-7A8MTY7 169 aa1.61□□□□□ -2.15
SCN1A-209ENST00000635750 LOC100996750A0A140TA64 210 aa1.6□□□□□ -2.15
SCN1A-209ENST00000635750 TNXBP22105 4242 aa1.6□□□□□ -2.15
SCN1A-209ENST00000635750 KMT2DO14686 5537 aa1.6□□□□□ -2.15
SCN1A-209ENST00000635750 KRTAP9-4Q9BYQ2 154 aa1.59□□□□□ -2.15
SCN1A-209ENST00000635750 KRTAP2-3P0C7H8 128 aa1.59□□□□□ -2.16
SCN1A-209ENST00000635750 KRTAP2-4Q9BYR9 128 aa1.59□□□□□ -2.16
SCN1A-209ENST00000635750 HSPG2P98160 4391 aa1.59□□□□□ -2.16
SCN1A-209ENST00000635750 MT1AP04731 61 aa1.57□□□□□ -2.16
SCN1A-209ENST00000635750 KRTAP4-3Q9BYR4 195 aa1.55□□□□□ -2.16
SCN1A-209ENST00000635750 KRTAP2-1Q9BYU5 128 aa1.55□□□□□ -2.16
SCN1A-209ENST00000635750 MYCBP2O75592 4640 aa1.52□□□□□ -2.17
SCN1A-209ENST00000635750 LPAP08519 4548 aa1.51□□□□□ -2.17
SCN1A-209ENST00000635750 KRTAP6-3Q3LI67 103 aa1.51□□□□□ -2.17
SCN1A-209ENST00000635750 KRTAP2-2Q9BYT5 123 aa1.51□□□□□ -2.17
SCN1A-209ENST00000635750 KRTAP9-9Q9BYP9 154 aa1.49□□□□□ -2.17
SCN1A-209ENST00000635750 KRTAP6-2Q3LI66 62 aa1.49□□□□□ -2.17
SCN1A-209ENST00000635750 KRTAP4-9Q9BYQ8 210 aa1.49□□□□□ -2.17
SCN1A-209ENST00000635750 MDN1Q9NU22 5596 aa1.45□□□□□ -2.18
SCN1A-209ENST00000635750 MUC17Q685J3 4493 aa1.44□□□□□ -2.18
SCN1A-209ENST00000635750 SYNE2Q8WXH0 6885 aaKnown RBP1.44□□□□□ -2.18
SCN1A-209ENST00000635750 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.43□□□□□ -2.18
SCN1A-209ENST00000635750 KRTAP19-2Q3LHN2 52 aa1.43□□□□□ -2.18
SCN1A-209ENST00000635750 KRTAP19-7Q3SYF9 63 aa1.43□□□□□ -2.18
SCN1A-209ENST00000635750 KRTAP6-1Q3LI64 71 aa1.42□□□□□ -2.18
SCN1A-209ENST00000635750 SYNE1Q8NF91 8797 aaKnown RBP1.37□□□□□ -2.19
SCN1A-209ENST00000635750 LRP2P98164 4655 aa1.35□□□□□ -2.19
SCN1A-209ENST00000635750 OBSCNQ5VST9 7968 aa1.33□□□□□ -2.2
SCN1A-209ENST00000635750 FCGBPQ9Y6R7 5405 aaPredicted RBP1.3□□□□□ -2.2
SCN1A-209ENST00000635750 KRTAP20-2Q3LI61 65 aa1.3□□□□□ -2.2
SCN1A-209ENST00000635750 KRTAP4-6Q9BYQ5 205 aa1.28□□□□□ -2.2
SCN1A-209ENST00000635750 FSIP2Q5CZC0 6907 aa1.27□□□□□ -2.21
SCN1A-209ENST00000635750 KRTAP4-11Q9BYQ6 195 aa1.25□□□□□ -2.21
SCN1A-209ENST00000635750 KRTAP4-12Q9BQ66 201 aa1.24□□□□□ -2.21
SCN1A-209ENST00000635750 KRTAP9-6A8MVA2 160 aa1.23□□□□□ -2.21
SCN1A-209ENST00000635750 MUC12Q9UKN1 5478 aa1.2□□□□□ -2.22
SCN1A-209ENST00000635750 GPR98Q8WXG9 6306 aa1.18□□□□□ -2.22
SCN1A-209ENST00000635750 KRTAP5-2Q701N4 177 aa1.18□□□□□ -2.22
SCN1A-209ENST00000635750 KRTAP4-4Q9BYR3 166 aa1.16□□□□□ -2.22
SCN1A-209ENST00000635750 KRTAP4-2Q9BYR5 136 aa1.16□□□□□ -2.22
SCN1A-209ENST00000635750 HMCN1Q96RW7 5635 aa1.12□□□□□ -2.23
SCN1A-209ENST00000635750 KRTAP5-9P26371 169 aa1.12□□□□□ -2.23
SCN1A-209ENST00000635750 KRTAP5-4Q6L8H1 288 aa1.11□□□□□ -2.23
SCN1A-209ENST00000635750 AHNAK2Q8IVF2 5795 aa1.1□□□□□ -2.23
SCN1A-209ENST00000635750 MUC5BQ9HC84 5762 aaPredicted RBP1.07□□□□□ -2.24
SCN1A-209ENST00000635750 NEBP20929 6669 aa1.03□□□□□ -2.24
SCN1A-209ENST00000635750 MUC19Q7Z5P9 8384 aa1.02□□□□□ -2.25
SCN1A-209ENST00000635750 DSTQ03001 7570 aaKnown RBP1.01□□□□□ -2.25
SCN1A-209ENST00000635750 KRTAP5-5Q701N2 237 aaPredicted RBP1□□□□□ -2.25
SCN1A-209ENST00000635750 MACF1Q9UPN3 7388 aaKnown RBP0.98□□□□□ -2.25
SCN1A-209ENST00000635750 PHGR1C9JFL3 82 aa0.97□□□□□ -2.25
SCN1A-209ENST00000635750 KRTAP5-3Q6L8H2 238 aa0.95□□□□□ -2.26
SCN1A-209ENST00000635750 MUC5ACP98088 5654 aa0.92□□□□□ -2.26
SCN1A-209ENST00000635750 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.92□□□□□ -2.26
SCN1A-209ENST00000635750 AHNAKQ09666 5890 aaKnown RBP0.89□□□□□ -2.27
SCN1A-209ENST00000635750 KRTAP5-8O75690 187 aa0.84□□□□□ -2.27
SCN1A-209ENST00000635750 KRTAP5-11Q6L8G4 156 aa0.81□□□□□ -2.28
SCN1A-209ENST00000635750 KRTAP5-10Q6L8G5 202 aa0.76□□□□□ -2.29
SCN1A-209ENST00000635750 KRTAP5-1Q6L8H4 278 aa0.73□□□□□ -2.29
SCN1A-209ENST00000635750 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
SCN1A-209ENST00000635750 KRTAP5-7Q6L8G8 165 aa0.67□□□□□ -2.3
SCN1A-209ENST00000635750 KRTAP21-2Q3LI59 83 aa0.67□□□□□ -2.3
SCN1A-209ENST00000635750 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 11.1 ms