RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 KRTAP19-4Q3LI73 84 aa6.39□□□□□ -1.39
PCF11-207ENST00000624931 KRTAP19-7Q3SYF9 63 aa6.36□□□□□ -1.39
PCF11-207ENST00000624931 MACF1Q9UPN3 7388 aaKnown RBP6.35□□□□□ -1.39
PCF11-207ENST00000624931 KRTAP9-7A8MTY7 169 aa6.28□□□□□ -1.4
PCF11-207ENST00000624931 SYNE2Q8WXH0 6885 aaKnown RBP6.27□□□□□ -1.41
PCF11-207ENST00000624931 MT1EP04732 61 aa6.25□□□□□ -1.41
PCF11-207ENST00000624931 SPRR2FQ96RM1 72 aa6.19□□□□□ -1.42
PCF11-207ENST00000624931 KRTAP2-3P0C7H8 128 aa6.11□□□□□ -1.43
PCF11-207ENST00000624931 MT1LQ93083 61 aa6.11□□□□□ -1.43
PCF11-207ENST00000624931 KRTAP2-4Q9BYR9 128 aa6.11□□□□□ -1.43
PCF11-207ENST00000624931 KRTAP2-1Q9BYU5 128 aa6.11□□□□□ -1.43
PCF11-207ENST00000624931 MUC12Q9UKN1 5478 aa6.1□□□□□ -1.43
PCF11-207ENST00000624931 KRTAP5-9P26371 169 aa6.09□□□□□ -1.43
PCF11-207ENST00000624931 KRTAP9-6A8MVA2 160 aa6.07□□□□□ -1.44
PCF11-207ENST00000624931 KRTAP6-3Q3LI67 103 aa6.07□□□□□ -1.44
PCF11-207ENST00000624931 KRTAP4-7Q9BYR0 210 aa6□□□□□ -1.45
PCF11-207ENST00000624931 KRTAP19-3Q7Z4W3 81 aa5.99□□□□□ -1.45
PCF11-207ENST00000624931 LCE1AQ5T7P2 110 aa5.92□□□□□ -1.46
PCF11-207ENST00000624931 SPRR2EP22531 72 aa5.9□□□□□ -1.47
PCF11-207ENST00000624931 SPRR2BP35325 72 aa5.9□□□□□ -1.47
PCF11-207ENST00000624931 SPRR2AP35326 72 aa5.9□□□□□ -1.47
PCF11-207ENST00000624931 LCE5AQ5TCM9 118 aa5.89□□□□□ -1.47
PCF11-207ENST00000624931 MT1MQ8N339 61 aa5.89□□□□□ -1.47
PCF11-207ENST00000624931 MT1GP13640 62 aa5.88□□□□□ -1.47
PCF11-207ENST00000624931 MDN1Q9NU22 5596 aa5.88□□□□□ -1.47
PCF11-207ENST00000624931 KRTAP4-3Q9BYR4 195 aa5.87□□□□□ -1.47
PCF11-207ENST00000624931 NEBP20929 6669 aa5.8□□□□□ -1.48
PCF11-207ENST00000624931 SPRR2DP22532 72 aa5.68□□□□□ -1.5
PCF11-207ENST00000624931 DSTQ03001 7570 aaKnown RBP5.53□□□□□ -1.52
PCF11-207ENST00000624931 KRTAP20-1Q3LI63 56 aa5.5□□□□□ -1.53
PCF11-207ENST00000624931 LCE3BQ5TA77 95 aa5.45□□□□□ -1.54
PCF11-207ENST00000624931 KRTAP12-4P60329 112 aa5.38□□□□□ -1.55
PCF11-207ENST00000624931 KRTAP5-5Q701N2 237 aaPredicted RBP5.31□□□□□ -1.56
PCF11-207ENST00000624931 KRTAP2-2Q9BYT5 123 aa5.27□□□□□ -1.57
PCF11-207ENST00000624931 MT1AP04731 61 aa5.25□□□□□ -1.57
PCF11-207ENST00000624931 KRTAP6-1Q3LI64 71 aa5.18□□□□□ -1.58
PCF11-207ENST00000624931 KRTAP5-3Q6L8H2 238 aa5.14□□□□□ -1.59
PCF11-207ENST00000624931 KRTAP9-9Q9BYP9 154 aa5.1□□□□□ -1.59
PCF11-207ENST00000624931 KRTAP9-4Q9BYQ2 154 aa5.1□□□□□ -1.59
PCF11-207ENST00000624931 KRTAP5-4Q6L8H1 288 aa5.07□□□□□ -1.6
PCF11-207ENST00000624931 LCE3DQ9BYE3 92 aa5□□□□□ -1.61
PCF11-207ENST00000624931 SYNE1Q8NF91 8797 aaKnown RBP5□□□□□ -1.61
PCF11-207ENST00000624931 LCE3EQ5T5B0 92 aa5□□□□□ -1.61
PCF11-207ENST00000624931 MT4P47944 62 aa4.97□□□□□ -1.61
PCF11-207ENST00000624931 LCE4AQ5TA78 99 aa4.96□□□□□ -1.62
PCF11-207ENST00000624931 KRTAP4-9Q9BYQ8 210 aa4.96□□□□□ -1.62
PCF11-207ENST00000624931 GPR98Q8WXG9 6306 aa4.96□□□□□ -1.62
PCF11-207ENST00000624931 KRTAP4-2Q9BYR5 136 aa4.93□□□□□ -1.62
PCF11-207ENST00000624931 LCE1DQ5T752 114 aa4.87□□□□□ -1.63
PCF11-207ENST00000624931 KRTAP4-12Q9BQ66 201 aa4.83□□□□□ -1.64
PCF11-207ENST00000624931 HMCN1Q96RW7 5635 aa4.78□□□□□ -1.64
PCF11-207ENST00000624931 KRTAP20-2Q3LI61 65 aa4.78□□□□□ -1.64
PCF11-207ENST00000624931 KRTAP6-2Q3LI66 62 aa4.77□□□□□ -1.65
PCF11-207ENST00000624931 PRM1P04553 51 aa4.75□□□□□ -1.65
PCF11-207ENST00000624931 MT3P25713 68 aa4.65□□□□□ -1.67
PCF11-207ENST00000624931 KRTAP5-2Q701N4 177 aa4.6□□□□□ -1.67
PCF11-207ENST00000624931 AHNAK2Q8IVF2 5795 aa4.51□□□□□ -1.69
PCF11-207ENST00000624931 KRTAP4-11Q9BYQ6 195 aa4.46□□□□□ -1.7
PCF11-207ENST00000624931 KRTAP5-10Q6L8G5 202 aa4.32□□□□□ -1.72
PCF11-207ENST00000624931 OBSCNQ5VST9 7968 aa4.29□□□□□ -1.72
PCF11-207ENST00000624931 KRTAP5-7Q6L8G8 165 aa4.24□□□□□ -1.73
PCF11-207ENST00000624931 LCE1FQ5T754 118 aa4.06□□□□□ -1.76
PCF11-207ENST00000624931 LCE1EQ5T753 118 aa4.01□□□□□ -1.77
PCF11-207ENST00000624931 KRTAP5-8O75690 187 aa4.01□□□□□ -1.77
PCF11-207ENST00000624931 KRTAP5-1Q6L8H4 278 aa4.01□□□□□ -1.77
PCF11-207ENST00000624931 LCE1BQ5T7P3 118 aa3.89□□□□□ -1.79
PCF11-207ENST00000624931 AHNAKQ09666 5890 aaKnown RBP3.87□□□□□ -1.79
PCF11-207ENST00000624931 MUC5ACP98088 5654 aa3.84□□□□□ -1.79
PCF11-207ENST00000624931 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
PCF11-207ENST00000624931 MUC5BQ9HC84 5762 aaPredicted RBP3.73□□□□□ -1.81
PCF11-207ENST00000624931 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
PCF11-207ENST00000624931 KRTAP21-2Q3LI59 83 aa3.37□□□□□ -1.87
PCF11-207ENST00000624931 KRTAP5-11Q6L8G4 156 aa3.34□□□□□ -1.87
PCF11-207ENST00000624931 KRTAP21-1Q3LI58 79 aa3.1□□□□□ -1.91
PCF11-207ENST00000624931 KRTAP4-4Q9BYR3 166 aa3.09□□□□□ -1.91
PCF11-207ENST00000624931 PHGR1C9JFL3 82 aa2.88□□□□□ -1.95
PCF11-207ENST00000624931 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
PCF11-207ENST00000624931 MUC16Q8WXI7 14507 aa1.86□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 64.8 ms