RNA–Protein interactions for RNA: ENST00000622697.4

GABRB3-215, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

TSL 5 BASIC

Gene GABRB3, Length 5,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-215ENST00000622697 LOC100996750A0A140TA64 210 aa5.2□□□□□ -1.58
GABRB3-215ENST00000622697 LCE3DQ9BYE3 92 aa5.18□□□□□ -1.58
GABRB3-215ENST00000622697 KRTAP4-3Q9BYR4 195 aa5.18□□□□□ -1.58
GABRB3-215ENST00000622697 MT1MQ8N339 61 aa5.08□□□□□ -1.6
GABRB3-215ENST00000622697 LCE3EQ5T5B0 92 aa5.07□□□□□ -1.6
GABRB3-215ENST00000622697 KRTAP19-7Q3SYF9 63 aa5.04□□□□□ -1.6
GABRB3-215ENST00000622697 KRTAP19-6Q3LI70 58 aa5.02□□□□□ -1.61
GABRB3-215ENST00000622697 SYNE1Q8NF91 8797 aaKnown RBP5□□□□□ -1.61
GABRB3-215ENST00000622697 LCE2AQ5TA79 106 aaPredicted RBP4.99□□□□□ -1.61
GABRB3-215ENST00000622697 KRTAP4-9Q9BYQ8 210 aa4.84□□□□□ -1.63
GABRB3-215ENST00000622697 KRTAP9-6A8MVA2 160 aa4.83□□□□□ -1.64
GABRB3-215ENST00000622697 SYNE2Q8WXH0 6885 aaKnown RBP4.81□□□□□ -1.64
GABRB3-215ENST00000622697 PRM1P04553 51 aa4.81□□□□□ -1.64
GABRB3-215ENST00000622697 KRTAP2-3P0C7H8 128 aa4.79□□□□□ -1.64
GABRB3-215ENST00000622697 KRTAP9-2Q9BYQ4 174 aa4.79□□□□□ -1.64
GABRB3-215ENST00000622697 KRTAP2-4Q9BYR9 128 aa4.79□□□□□ -1.64
GABRB3-215ENST00000622697 KRTAP2-1Q9BYU5 128 aa4.79□□□□□ -1.64
GABRB3-215ENST00000622697 LCE2DQ5TA82 110 aaPredicted RBP4.77□□□□□ -1.65
GABRB3-215ENST00000622697 MT4P47944 62 aa4.76□□□□□ -1.65
GABRB3-215ENST00000622697 MT3P25713 68 aa4.73□□□□□ -1.65
GABRB3-215ENST00000622697 KMT2DO14686 5537 aa4.69□□□□□ -1.66
GABRB3-215ENST00000622697 MT1AP04731 61 aa4.64□□□□□ -1.67
GABRB3-215ENST00000622697 FCGBPQ9Y6R7 5405 aaPredicted RBP4.63□□□□□ -1.67
GABRB3-215ENST00000622697 USH2AO75445 5202 aa4.61□□□□□ -1.67
GABRB3-215ENST00000622697 OBSCNQ5VST9 7968 aa4.57□□□□□ -1.68
GABRB3-215ENST00000622697 KRTAP6-1Q3LI64 71 aa4.55□□□□□ -1.68
GABRB3-215ENST00000622697 DSTQ03001 7570 aaKnown RBP4.54□□□□□ -1.68
GABRB3-215ENST00000622697 LCE1DQ5T752 114 aa4.53□□□□□ -1.68
GABRB3-215ENST00000622697 LCE1BQ5T7P3 118 aa4.52□□□□□ -1.69
GABRB3-215ENST00000622697 LCE5AQ5TCM9 118 aa4.48□□□□□ -1.69
GABRB3-215ENST00000622697 KRTAP6-2Q3LI66 62 aa4.39□□□□□ -1.71
GABRB3-215ENST00000622697 LCE1AQ5T7P2 110 aa4.36□□□□□ -1.71
GABRB3-215ENST00000622697 KRTAP9-6A0A140TA67 174 aa4.33□□□□□ -1.72
GABRB3-215ENST00000622697 KRTAP9-7A8MTY7 169 aa4.32□□□□□ -1.72
GABRB3-215ENST00000622697 KRTAP9-4Q9BYQ2 154 aa4.31□□□□□ -1.72
GABRB3-215ENST00000622697 MUC12Q9UKN1 5478 aa4.24□□□□□ -1.73
GABRB3-215ENST00000622697 KRTAP6-3Q3LI67 103 aa4.19□□□□□ -1.74
GABRB3-215ENST00000622697 MACF1Q9UPN3 7388 aaKnown RBP4.19□□□□□ -1.74
GABRB3-215ENST00000622697 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.16□□□□□ -1.74
GABRB3-215ENST00000622697 SSPOA2VEC9 5147 aa4.16□□□□□ -1.74
GABRB3-215ENST00000622697 KRTAP20-1Q3LI63 56 aa4.05□□□□□ -1.76
GABRB3-215ENST00000622697 LCE4AQ5TA78 99 aa3.97□□□□□ -1.77
GABRB3-215ENST00000622697 KRTAP2-2Q9BYT5 123 aa3.89□□□□□ -1.79
GABRB3-215ENST00000622697 KRTAP5-9P26371 169 aa3.82□□□□□ -1.8
GABRB3-215ENST00000622697 KRTAP4-6Q9BYQ5 205 aa3.77□□□□□ -1.81
GABRB3-215ENST00000622697 MDN1Q9NU22 5596 aa3.68□□□□□ -1.82
GABRB3-215ENST00000622697 NEBP20929 6669 aa3.67□□□□□ -1.82
GABRB3-215ENST00000622697 LCE1CQ5T751 118 aa3.67□□□□□ -1.82
GABRB3-215ENST00000622697 LCE1EQ5T753 118 aa3.67□□□□□ -1.82
GABRB3-215ENST00000622697 LCE1FQ5T754 118 aa3.67□□□□□ -1.82
GABRB3-215ENST00000622697 KRTAP4-11Q9BYQ6 195 aa3.62□□□□□ -1.83
GABRB3-215ENST00000622697 KRTAP20-2Q3LI61 65 aa3.59□□□□□ -1.83
GABRB3-215ENST00000622697 KRTAP5-5Q701N2 237 aaPredicted RBP3.59□□□□□ -1.84
GABRB3-215ENST00000622697 MUC19Q7Z5P9 8384 aa3.53□□□□□ -1.84
GABRB3-215ENST00000622697 KRTAP4-4Q9BYR3 166 aa3.36□□□□□ -1.87
GABRB3-215ENST00000622697 KRTAP9-9Q9BYP9 154 aa3.35□□□□□ -1.87
GABRB3-215ENST00000622697 KRTAP4-12Q9BQ66 201 aa3.25□□□□□ -1.89
GABRB3-215ENST00000622697 KRTAP4-2Q9BYR5 136 aa3.25□□□□□ -1.89
GABRB3-215ENST00000622697 KRTAP5-4Q6L8H1 288 aa3.24□□□□□ -1.89
GABRB3-215ENST00000622697 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
GABRB3-215ENST00000622697 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
GABRB3-215ENST00000622697 HMCN1Q96RW7 5635 aa2.97□□□□□ -1.93
GABRB3-215ENST00000622697 KRTAP5-3Q6L8H2 238 aa2.83□□□□□ -1.96
GABRB3-215ENST00000622697 KRTAP5-10Q6L8G5 202 aa2.79□□□□□ -1.96
GABRB3-215ENST00000622697 KRTAP5-2Q701N4 177 aa2.74□□□□□ -1.97
GABRB3-215ENST00000622697 KRTAP5-8O75690 187 aa2.69□□□□□ -1.98
GABRB3-215ENST00000622697 AHNAK2Q8IVF2 5795 aa2.65□□□□□ -1.99
GABRB3-215ENST00000622697 KRTAP5-1Q6L8H4 278 aa2.47□□□□□ -2.01
GABRB3-215ENST00000622697 MUC5BQ9HC84 5762 aaPredicted RBP2.43□□□□□ -2.02
GABRB3-215ENST00000622697 KRTAP21-2Q3LI59 83 aa2.42□□□□□ -2.02
GABRB3-215ENST00000622697 KRTAP5-11Q6L8G4 156 aa2.35□□□□□ -2.03
GABRB3-215ENST00000622697 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
GABRB3-215ENST00000622697 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
GABRB3-215ENST00000622697 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
GABRB3-215ENST00000622697 KRTAP21-1Q3LI58 79 aa2.16□□□□□ -2.06
GABRB3-215ENST00000622697 KRTAP5-7Q6L8G8 165 aa1.95□□□□□ -2.1
GABRB3-215ENST00000622697 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 94.9 ms