RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 KRTAP19-5Q3LI72 72 aa4.31□□□□□ -1.72
UPF3B-204ENST00000619445 SMIM26A0A096LP01 95 aa4.3□□□□□ -1.72
UPF3B-204ENST00000619445 KRTAP12-1P59990 96 aa4.3□□□□□ -1.72
UPF3B-204ENST00000619445 COX7CP15954 63 aa4.27□□□□□ -1.73
UPF3B-204ENST00000619445 A0A1B0GU69 56 aa4.24□□□□□ -1.73
UPF3B-204ENST00000619445 MT1MQ8N339 61 aa4.24□□□□□ -1.73
UPF3B-204ENST00000619445 H7BZZ5 65 aa4.23□□□□□ -1.73
UPF3B-204ENST00000619445 MT1LQ93083 61 aa4.23□□□□□ -1.73
UPF3B-204ENST00000619445 TNP1P09430 55 aa4.22□□□□□ -1.73
UPF3B-204ENST00000619445 HMCN1Q96RW7 5635 aa4.22□□□□□ -1.73
UPF3B-204ENST00000619445 MT4P47944 62 aa4.18□□□□□ -1.74
UPF3B-204ENST00000619445 C10orf95Q9H7T3 257 aa4.16□□□□□ -1.74
UPF3B-204ENST00000619445 LCE3AQ5TA76 89 aa4.14□□□□□ -1.75
UPF3B-204ENST00000619445 A8MU10 97 aa4.14□□□□□ -1.75
UPF3B-204ENST00000619445 KRTAP5-4Q6L8H1 288 aa4.14□□□□□ -1.75
UPF3B-204ENST00000619445 PRR15LQ9BU68 103 aa4.13□□□□□ -1.75
UPF3B-204ENST00000619445 AHNAK2Q8IVF2 5795 aa4.12□□□□□ -1.75
UPF3B-204ENST00000619445 NDUFAF8A1L188 74 aa4.07□□□□□ -1.76
UPF3B-204ENST00000619445 KRTAP4-3Q9BYR4 195 aa4.06□□□□□ -1.76
UPF3B-204ENST00000619445 ATP5EP56381 51 aaPredicted RBP4.05□□□□□ -1.76
UPF3B-204ENST00000619445 KRTAP12-3P60328 96 aa4.03□□□□□ -1.76
UPF3B-204ENST00000619445 KRTAP5-10Q6L8G5 202 aa4.03□□□□□ -1.76
UPF3B-204ENST00000619445 ANAPC13Q9BS18 74 aa4.03□□□□□ -1.76
UPF3B-204ENST00000619445 LINC01558Q9Y6Z2 57 aa3.98□□□□□ -1.77
UPF3B-204ENST00000619445 UQCR11O14957 56 aa3.96□□□□□ -1.78
UPF3B-204ENST00000619445 MT3P25713 68 aa3.94□□□□□ -1.78
UPF3B-204ENST00000619445 SPRR5A0A1B0GTR4 108 aa3.92□□□□□ -1.78
UPF3B-204ENST00000619445 KRTAP25-1Q3LHN0 102 aa3.92□□□□□ -1.78
UPF3B-204ENST00000619445 KRTAP5-7Q6L8G8 165 aa3.92□□□□□ -1.78
UPF3B-204ENST00000619445 KRTAP12-4P60329 112 aa3.91□□□□□ -1.78
UPF3B-204ENST00000619445 KRTAP20-2Q3LI61 65 aa3.9□□□□□ -1.78
UPF3B-204ENST00000619445 CCDC179H3BU77 68 aa3.89□□□□□ -1.79
UPF3B-204ENST00000619445 KRTAP5-5Q701N2 237 aaPredicted RBP3.89□□□□□ -1.79
UPF3B-204ENST00000619445 K7ERS5 55 aa3.87□□□□□ -1.79
UPF3B-204ENST00000619445 TMEM258P61165 79 aa3.84□□□□□ -1.79
UPF3B-204ENST00000619445 MIR22HGQ0VDD5 57 aa3.82□□□□□ -1.8
UPF3B-204ENST00000619445 SYNE1Q8NF91 8797 aaKnown RBP3.73□□□□□ -1.81
UPF3B-204ENST00000619445 V9GYY9 64 aa3.73□□□□□ -1.81
UPF3B-204ENST00000619445 LCE3CQ5T5A8 94 aa3.7□□□□□ -1.82
UPF3B-204ENST00000619445 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.66□□□□□ -1.82
UPF3B-204ENST00000619445 PSPHP1O15172 72 aa3.63□□□□□ -1.83
UPF3B-204ENST00000619445 Q1T7F1 81 aa3.63□□□□□ -1.83
UPF3B-204ENST00000619445 MT1AP04731 61 aa3.61□□□□□ -1.83
UPF3B-204ENST00000619445 KRTAP5-2Q701N4 177 aa3.6□□□□□ -1.83
UPF3B-204ENST00000619445 CDC42SE1Q9NRR8 79 aa3.59□□□□□ -1.83
UPF3B-204ENST00000619445 RPS28P62857 69 aaKnown RBP3.55□□□□□ -1.84
UPF3B-204ENST00000619445 KRTAP6-1Q3LI64 71 aa3.55□□□□□ -1.84
UPF3B-204ENST00000619445 A6NED7 52 aa3.54□□□□□ -1.84
UPF3B-204ENST00000619445 ROMO1P60602 79 aa3.5□□□□□ -1.85
UPF3B-204ENST00000619445 AHNAKQ09666 5890 aaKnown RBP3.48□□□□□ -1.85
UPF3B-204ENST00000619445 KRTAP5-8O75690 187 aa3.47□□□□□ -1.85
UPF3B-204ENST00000619445 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
UPF3B-204ENST00000619445 MUC5ACP98088 5654 aa3.44□□□□□ -1.86
UPF3B-204ENST00000619445 MUC5BQ9HC84 5762 aaPredicted RBP3.43□□□□□ -1.86
UPF3B-204ENST00000619445 KRTAP6-2Q3LI66 62 aa3.43□□□□□ -1.86
UPF3B-204ENST00000619445 KRTAP9-6A8MVA2 160 aa3.41□□□□□ -1.86
UPF3B-204ENST00000619445 OBSCNQ5VST9 7968 aa3.39□□□□□ -1.87
UPF3B-204ENST00000619445 KRTAP5-11Q6L8G4 156 aa3.25□□□□□ -1.89
UPF3B-204ENST00000619445 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
UPF3B-204ENST00000619445 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
UPF3B-204ENST00000619445 PRO0628Q9UI54 55 aa3.14□□□□□ -1.91
UPF3B-204ENST00000619445 LUZP6Q538Z0 58 aa3.08□□□□□ -1.92
UPF3B-204ENST00000619445 KRTAP4-4Q9BYR3 166 aa3.05□□□□□ -1.92
UPF3B-204ENST00000619445 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
UPF3B-204ENST00000619445 LCE1CQ5T751 118 aa2.87□□□□□ -1.95
UPF3B-204ENST00000619445 LCE1BQ5T7P3 118 aa2.87□□□□□ -1.95
UPF3B-204ENST00000619445 PMAIP1Q13794 54 aa2.87□□□□□ -1.95
UPF3B-204ENST00000619445 BRK1Q8WUW1 75 aa2.84□□□□□ -1.96
UPF3B-204ENST00000619445 KTN1-AS1Q86SY8 53 aa2.75□□□□□ -1.97
UPF3B-204ENST00000619445 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.98
UPF3B-204ENST00000619445 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
UPF3B-204ENST00000619445 KRTAP21-2Q3LI59 83 aa2.35□□□□□ -2.03
UPF3B-204ENST00000619445 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
UPF3B-204ENST00000619445 INE1O15225 51 aa1.85□□□□□ -2.11
UPF3B-204ENST00000619445 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.12
UPF3B-204ENST00000619445 PRM1P04553 51 aa1.74□□□□□ -2.13
UPF3B-204ENST00000619445 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 183 ms