RNA–Protein interactions for RNA: ENST00000613547.4

MDC1-209, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 5 BASIC

Gene MDC1, Length 830 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-209ENST00000613547 KRTAP4-7Q9BYR0 210 aa5□□□□□ -1.61
MDC1-209ENST00000613547 LCE1AQ5T7P2 110 aa4.99□□□□□ -1.61
MDC1-209ENST00000613547 KRTAP25-1Q3LHN0 102 aa4.97□□□□□ -1.61
MDC1-209ENST00000613547 LCE5AQ5TCM9 118 aa4.97□□□□□ -1.61
MDC1-209ENST00000613547 KRTAP4-9Q9BYQ8 210 aa4.96□□□□□ -1.62
MDC1-209ENST00000613547 LCE3AQ5TA76 89 aa4.95□□□□□ -1.62
MDC1-209ENST00000613547 KRTAP19-7Q3SYF9 63 aa4.94□□□□□ -1.62
MDC1-209ENST00000613547 KRTAP19-5Q3LI72 72 aa4.92□□□□□ -1.62
MDC1-209ENST00000613547 MT1EP04732 61 aa4.91□□□□□ -1.62
MDC1-209ENST00000613547 SPRR2DP22532 72 aa4.87□□□□□ -1.63
MDC1-209ENST00000613547 KRTAP20-1Q3LI63 56 aa4.87□□□□□ -1.63
MDC1-209ENST00000613547 ROMO1P60602 79 aa4.86□□□□□ -1.63
MDC1-209ENST00000613547 KRTAP4-11Q9BYQ6 195 aa4.83□□□□□ -1.64
MDC1-209ENST00000613547 KRTAP2-3P0C7H8 128 aa4.82□□□□□ -1.64
MDC1-209ENST00000613547 KRTAP19-3Q7Z4W3 81 aa4.82□□□□□ -1.64
MDC1-209ENST00000613547 KRTAP2-4Q9BYR9 128 aa4.82□□□□□ -1.64
MDC1-209ENST00000613547 BRK1Q8WUW1 75 aa4.79□□□□□ -1.64
MDC1-209ENST00000613547 KRTAP12-3P60328 96 aa4.78□□□□□ -1.64
MDC1-209ENST00000613547 KRTAP15-1Q3LI76 137 aa4.76□□□□□ -1.65
MDC1-209ENST00000613547 KRTAP4-2Q9BYR5 136 aa4.76□□□□□ -1.65
MDC1-209ENST00000613547 MT1GP13640 62 aa4.75□□□□□ -1.65
MDC1-209ENST00000613547 PP632Q6XCG6 107 aa4.75□□□□□ -1.65
MDC1-209ENST00000613547 MT1LQ93083 61 aa4.74□□□□□ -1.65
MDC1-209ENST00000613547 GPR98Q8WXG9 6306 aa4.69□□□□□ -1.66
MDC1-209ENST00000613547 KRTAP2-2Q9BYT5 123 aa4.68□□□□□ -1.66
MDC1-209ENST00000613547 KRTAP2-1Q9BYU5 128 aa4.68□□□□□ -1.66
MDC1-209ENST00000613547 MT1MQ8N339 61 aa4.65□□□□□ -1.67
MDC1-209ENST00000613547 DSTQ03001 7570 aaKnown RBP4.57□□□□□ -1.68
MDC1-209ENST00000613547 PMAIP1Q13794 54 aa4.52□□□□□ -1.69
MDC1-209ENST00000613547 PRO0628Q9UI54 55 aa4.51□□□□□ -1.69
MDC1-209ENST00000613547 KRTAP4-3Q9BYR4 195 aa4.5□□□□□ -1.69
MDC1-209ENST00000613547 LCE3CQ5T5A8 94 aa4.42□□□□□ -1.7
MDC1-209ENST00000613547 KRTAP5-4Q6L8H1 288 aa4.26□□□□□ -1.73
MDC1-209ENST00000613547 A0A0A0MQY5 61 aa4.24□□□□□ -1.73
MDC1-209ENST00000613547 PRAC1Q96KF2 57 aa4.24□□□□□ -1.73
MDC1-209ENST00000613547 MT4P47944 62 aa4.22□□□□□ -1.73
MDC1-209ENST00000613547 KRTAP5-5Q701N2 237 aaPredicted RBP4.22□□□□□ -1.73
MDC1-209ENST00000613547 HMCN1Q96RW7 5635 aa4.16□□□□□ -1.74
MDC1-209ENST00000613547 KTN1-AS1Q86SY8 53 aa4.16□□□□□ -1.74
MDC1-209ENST00000613547 KRTAP9-6A8MVA2 160 aa4.11□□□□□ -1.75
MDC1-209ENST00000613547 KRTAP12-4P60329 112 aa4.11□□□□□ -1.75
MDC1-209ENST00000613547 SPRR5A0A1B0GTR4 108 aa4.05□□□□□ -1.76
MDC1-209ENST00000613547 MT1AP04731 61 aa4.05□□□□□ -1.76
MDC1-209ENST00000613547 SYNE1Q8NF91 8797 aaKnown RBP4.04□□□□□ -1.76
MDC1-209ENST00000613547 KRTAP5-3Q6L8H2 238 aa4.03□□□□□ -1.76
MDC1-209ENST00000613547 KRTAP20-2Q3LI61 65 aa4.01□□□□□ -1.77
MDC1-209ENST00000613547 AHNAK2Q8IVF2 5795 aa3.99□□□□□ -1.77
MDC1-209ENST00000613547 KRTAP6-1Q3LI64 71 aa3.97□□□□□ -1.77
MDC1-209ENST00000613547 KRTAP5-10Q6L8G5 202 aa3.84□□□□□ -1.79
MDC1-209ENST00000613547 KRTAP5-7Q6L8G8 165 aa3.83□□□□□ -1.8
MDC1-209ENST00000613547 MT3P25713 68 aa3.81□□□□□ -1.8
MDC1-209ENST00000613547 KRTAP5-2Q701N4 177 aa3.77□□□□□ -1.81
MDC1-209ENST00000613547 KRTAP6-2Q3LI66 62 aa3.76□□□□□ -1.81
MDC1-209ENST00000613547 LUZP6Q538Z0 58 aa3.62□□□□□ -1.83
MDC1-209ENST00000613547 AHNAKQ09666 5890 aaKnown RBP3.59□□□□□ -1.84
MDC1-209ENST00000613547 OBSCNQ5VST9 7968 aa3.52□□□□□ -1.85
MDC1-209ENST00000613547 NDUFAF8A1L188 74 aa3.48□□□□□ -1.85
MDC1-209ENST00000613547 KRTAP5-8O75690 187 aa3.45□□□□□ -1.86
MDC1-209ENST00000613547 MUC5BQ9HC84 5762 aaPredicted RBP3.43□□□□□ -1.86
MDC1-209ENST00000613547 MUC5ACP98088 5654 aa3.39□□□□□ -1.87
MDC1-209ENST00000613547 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
MDC1-209ENST00000613547 KRTAP5-1Q6L8H4 278 aa3.32□□□□□ -1.88
MDC1-209ENST00000613547 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
MDC1-209ENST00000613547 LCE3DQ9BYE3 92 aa3.26□□□□□ -1.89
MDC1-209ENST00000613547 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
MDC1-209ENST00000613547 LCE3EQ5T5B0 92 aa3.11□□□□□ -1.91
MDC1-209ENST00000613547 LCE1BQ5T7P3 118 aa3.11□□□□□ -1.91
MDC1-209ENST00000613547 LCE1CQ5T751 118 aa3.09□□□□□ -1.91
MDC1-209ENST00000613547 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.09□□□□□ -1.91
MDC1-209ENST00000613547 INE1O15225 51 aa2.78□□□□□ -1.96
MDC1-209ENST00000613547 KRTAP21-2Q3LI59 83 aa2.61□□□□□ -1.99
MDC1-209ENST00000613547 KRTAP4-4Q9BYR3 166 aa2.56□□□□□ -2
MDC1-209ENST00000613547 PRM1P04553 51 aa2.48□□□□□ -2.01
MDC1-209ENST00000613547 PHGR1C9JFL3 82 aa2.38□□□□□ -2.03
MDC1-209ENST00000613547 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
MDC1-209ENST00000613547 KRTAP21-1Q3LI58 79 aa1.76□□□□□ -2.13
MDC1-209ENST00000613547 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 227 ms