RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 MT1LQ93083 61 aa5.72□□□□□ -1.49
CNOT3-208ENST00000613073 MACF1Q9UPN3 7388 aaKnown RBP5.64□□□□□ -1.51
CNOT3-208ENST00000613073 KRTAP2-3P0C7H8 128 aa5.64□□□□□ -1.51
CNOT3-208ENST00000613073 KRTAP2-4Q9BYR9 128 aa5.64□□□□□ -1.51
CNOT3-208ENST00000613073 KRTAP2-1Q9BYU5 128 aa5.64□□□□□ -1.51
CNOT3-208ENST00000613073 KRTAP9-2Q9BYQ4 174 aa5.53□□□□□ -1.52
CNOT3-208ENST00000613073 SYNE2Q8WXH0 6885 aaKnown RBP5.52□□□□□ -1.53
CNOT3-208ENST00000613073 KRTAP19-4Q3LI73 84 aa5.51□□□□□ -1.53
CNOT3-208ENST00000613073 KRTAP4-3Q9BYR4 195 aa5.5□□□□□ -1.53
CNOT3-208ENST00000613073 SPRR2FQ96RM1 72 aa5.48□□□□□ -1.53
CNOT3-208ENST00000613073 KRTAP19-3Q7Z4W3 81 aa5.46□□□□□ -1.53
CNOT3-208ENST00000613073 DSTQ03001 7570 aaKnown RBP5.46□□□□□ -1.54
CNOT3-208ENST00000613073 MT1MQ8N339 61 aa5.42□□□□□ -1.54
CNOT3-208ENST00000613073 MT1GP13640 62 aa5.41□□□□□ -1.54
CNOT3-208ENST00000613073 LOC100996750A0A140TA64 210 aa5.4□□□□□ -1.55
CNOT3-208ENST00000613073 CRCT1Q9UGL9 99 aa5.38□□□□□ -1.55
CNOT3-208ENST00000613073 MDN1Q9NU22 5596 aa5.36□□□□□ -1.55
CNOT3-208ENST00000613073 LCE5AQ5TCM9 118 aa5.32□□□□□ -1.56
CNOT3-208ENST00000613073 KRTAP12-4P60329 112 aa5.27□□□□□ -1.57
CNOT3-208ENST00000613073 KRTAP5-9P26371 169 aa5.14□□□□□ -1.59
CNOT3-208ENST00000613073 LCE1AQ5T7P2 110 aa5.12□□□□□ -1.59
CNOT3-208ENST00000613073 KRTAP9-7A8MTY7 169 aa5.07□□□□□ -1.6
CNOT3-208ENST00000613073 SPRR2EP22531 72 aa5.07□□□□□ -1.6
CNOT3-208ENST00000613073 SPRR2BP35325 72 aa5.07□□□□□ -1.6
CNOT3-208ENST00000613073 SPRR2AP35326 72 aa5.07□□□□□ -1.6
CNOT3-208ENST00000613073 SYNE1Q8NF91 8797 aaKnown RBP5.04□□□□□ -1.6
CNOT3-208ENST00000613073 KRTAP4-9Q9BYQ8 210 aa4.99□□□□□ -1.61
CNOT3-208ENST00000613073 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.95□□□□□ -1.62
CNOT3-208ENST00000613073 LCE3BQ5TA77 95 aa4.93□□□□□ -1.62
CNOT3-208ENST00000613073 KRTAP6-1Q3LI64 71 aa4.87□□□□□ -1.63
CNOT3-208ENST00000613073 KRTAP6-3Q3LI67 103 aa4.87□□□□□ -1.63
CNOT3-208ENST00000613073 SPRR2DP22532 72 aa4.85□□□□□ -1.63
CNOT3-208ENST00000613073 KRTAP5-5Q701N2 237 aaPredicted RBP4.8□□□□□ -1.64
CNOT3-208ENST00000613073 MT1AP04731 61 aa4.8□□□□□ -1.64
CNOT3-208ENST00000613073 PRM1P04553 51 aa4.75□□□□□ -1.65
CNOT3-208ENST00000613073 OBSCNQ5VST9 7968 aa4.71□□□□□ -1.66
CNOT3-208ENST00000613073 LCE3DQ9BYE3 92 aa4.65□□□□□ -1.66
CNOT3-208ENST00000613073 NEBP20929 6669 aa4.65□□□□□ -1.67
CNOT3-208ENST00000613073 LCE3EQ5T5B0 92 aa4.62□□□□□ -1.67
CNOT3-208ENST00000613073 KRTAP2-2Q9BYT5 123 aa4.59□□□□□ -1.68
CNOT3-208ENST00000613073 KRTAP9-4Q9BYQ2 154 aa4.55□□□□□ -1.68
CNOT3-208ENST00000613073 GPR98Q8WXG9 6306 aa4.46□□□□□ -1.7
CNOT3-208ENST00000613073 KRTAP6-2Q3LI66 62 aa4.43□□□□□ -1.7
CNOT3-208ENST00000613073 KRTAP20-1Q3LI63 56 aa4.42□□□□□ -1.7
CNOT3-208ENST00000613073 KRTAP5-4Q6L8H1 288 aa4.36□□□□□ -1.71
CNOT3-208ENST00000613073 MT3P25713 68 aa4.34□□□□□ -1.72
CNOT3-208ENST00000613073 LCE1EQ5T753 118 aa4.32□□□□□ -1.72
CNOT3-208ENST00000613073 MT4P47944 62 aa4.31□□□□□ -1.72
CNOT3-208ENST00000613073 KRTAP4-6Q9BYQ5 205 aa4.3□□□□□ -1.72
CNOT3-208ENST00000613073 HMCN1Q96RW7 5635 aa4.2□□□□□ -1.74
CNOT3-208ENST00000613073 LCE4AQ5TA78 99 aa4.17□□□□□ -1.74
CNOT3-208ENST00000613073 LCE1DQ5T752 114 aa4.15□□□□□ -1.75
CNOT3-208ENST00000613073 KRTAP20-2Q3LI61 65 aa4.14□□□□□ -1.75
CNOT3-208ENST00000613073 KRTAP5-2Q701N4 177 aa4.02□□□□□ -1.77
CNOT3-208ENST00000613073 KRTAP5-3Q6L8H2 238 aa3.94□□□□□ -1.78
CNOT3-208ENST00000613073 KRTAP9-9Q9BYP9 154 aa3.92□□□□□ -1.78
CNOT3-208ENST00000613073 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
CNOT3-208ENST00000613073 MUC5BQ9HC84 5762 aaPredicted RBP3.84□□□□□ -1.79
CNOT3-208ENST00000613073 KRTAP5-7Q6L8G8 165 aa3.79□□□□□ -1.8
CNOT3-208ENST00000613073 AHNAKQ09666 5890 aaKnown RBP3.72□□□□□ -1.81
CNOT3-208ENST00000613073 MUC5ACP98088 5654 aa3.69□□□□□ -1.82
CNOT3-208ENST00000613073 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
CNOT3-208ENST00000613073 KRTAP4-11Q9BYQ6 195 aa3.6□□□□□ -1.83
CNOT3-208ENST00000613073 AHNAK2Q8IVF2 5795 aa3.54□□□□□ -1.84
CNOT3-208ENST00000613073 KRTAP5-10Q6L8G5 202 aa3.53□□□□□ -1.84
CNOT3-208ENST00000613073 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
CNOT3-208ENST00000613073 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
CNOT3-208ENST00000613073 LCE1CQ5T751 118 aa3.4□□□□□ -1.87
CNOT3-208ENST00000613073 KRTAP5-8O75690 187 aa3.35□□□□□ -1.87
CNOT3-208ENST00000613073 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
CNOT3-208ENST00000613073 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.16□□□□□ -1.9
CNOT3-208ENST00000613073 KRTAP21-2Q3LI59 83 aa3.14□□□□□ -1.91
CNOT3-208ENST00000613073 KRTAP5-11Q6L8G4 156 aa2.95□□□□□ -1.94
CNOT3-208ENST00000613073 KRTAP4-4Q9BYR3 166 aa2.94□□□□□ -1.94
CNOT3-208ENST00000613073 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
CNOT3-208ENST00000613073 KRTAP21-1Q3LI58 79 aa2.9□□□□□ -1.94
CNOT3-208ENST00000613073 PHGR1C9JFL3 82 aa2.56□□□□□ -2
CNOT3-208ENST00000613073 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 79.3 ms