RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	KRTAP19-7	Q3SYF9	63 aa		4.12	□□□□□ -1.75
TPM3-223	ENST00000611659	LCE3B	Q5TA77	95 aa		4.05	□□□□□ -1.76
TPM3-223	ENST00000611659	MT1L	Q93083	61 aa		4.02	□□□□□ -1.77
TPM3-223	ENST00000611659	SSPO	A2VEC9	5147 aa		4	□□□□□ -1.77
TPM3-223	ENST00000611659	MT1E	P04732	61 aa		3.98	□□□□□ -1.77
TPM3-223	ENST00000611659	LCE4A	Q5TA78	99 aa		3.96	□□□□□ -1.78
TPM3-223	ENST00000611659	KRTAP9-9	Q9BYP9	154 aa		3.96	□□□□□ -1.78
TPM3-223	ENST00000611659	KRTAP9-4	Q9BYQ2	154 aa		3.96	□□□□□ -1.78
TPM3-223	ENST00000611659	KRTAP4-12	Q9BQ66	201 aa		3.95	□□□□□ -1.78
TPM3-223	ENST00000611659	KRTAP19-4	Q3LI73	84 aa		3.9	□□□□□ -1.78
TPM3-223	ENST00000611659	MUC12	Q9UKN1	5478 aa		3.9	□□□□□ -1.79
TPM3-223	ENST00000611659	KRTAP4-3	Q9BYR4	195 aa		3.89	□□□□□ -1.79
TPM3-223	ENST00000611659	CRCT1	Q9UGL9	99 aa		3.89	□□□□□ -1.79
TPM3-223	ENST00000611659	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.88	□□□□□ -1.79
TPM3-223	ENST00000611659	DST	Q03001	7570 aa	Known RBP	3.87	□□□□□ -1.79
TPM3-223	ENST00000611659	MT1G	P13640	62 aa		3.86	□□□□□ -1.79
TPM3-223	ENST00000611659	KRTAP12-4	P60329	112 aa		3.84	□□□□□ -1.79
TPM3-223	ENST00000611659	KRTAP19-6	Q3LI70	58 aa		3.73	□□□□□ -1.81
TPM3-223	ENST00000611659	MT1M	Q8N339	61 aa		3.71	□□□□□ -1.82
TPM3-223	ENST00000611659	KRTAP9-7	A8MTY7	169 aa		3.7	□□□□□ -1.82
TPM3-223	ENST00000611659	KRTAP19-3	Q7Z4W3	81 aa		3.67	□□□□□ -1.82
TPM3-223	ENST00000611659	SYNE1	Q8NF91	8797 aa	Known RBP	3.67	□□□□□ -1.82
TPM3-223	ENST00000611659	LCE1D	Q5T752	114 aa		3.67	□□□□□ -1.82
TPM3-223	ENST00000611659	KRTAP4-9	Q9BYQ8	210 aa		3.64	□□□□□ -1.83
TPM3-223	ENST00000611659	SPRR2F	Q96RM1	72 aa		3.61	□□□□□ -1.83
TPM3-223	ENST00000611659	MACF1	Q9UPN3	7388 aa	Known RBP	3.55	□□□□□ -1.84
TPM3-223	ENST00000611659	KRTAP4-2	Q9BYR5	136 aa		3.53	□□□□□ -1.84
TPM3-223	ENST00000611659	OBSCN	Q5VST9	7968 aa		3.51	□□□□□ -1.85
TPM3-223	ENST00000611659	SYNE2	Q8WXH0	6885 aa	Known RBP	3.5	□□□□□ -1.85
TPM3-223	ENST00000611659	MDN1	Q9NU22	5596 aa		3.49	□□□□□ -1.85
TPM3-223	ENST00000611659	LCE5A	Q5TCM9	118 aa		3.49	□□□□□ -1.85
TPM3-223	ENST00000611659	LCE3D	Q9BYE3	92 aa		3.46	□□□□□ -1.85
TPM3-223	ENST00000611659	KRTAP4-11	Q9BYQ6	195 aa		3.46	□□□□□ -1.86
TPM3-223	ENST00000611659	KRTAP6-1	Q3LI64	71 aa		3.45	□□□□□ -1.86
TPM3-223	ENST00000611659	MT1A	P04731	61 aa		3.44	□□□□□ -1.86
TPM3-223	ENST00000611659	PRM1	P04553	51 aa		3.43	□□□□□ -1.86
TPM3-223	ENST00000611659	LCE3E	Q5T5B0	92 aa		3.43	□□□□□ -1.86
TPM3-223	ENST00000611659	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.37	□□□□□ -1.87
TPM3-223	ENST00000611659	LCE1A	Q5T7P2	110 aa		3.26	□□□□□ -1.89
TPM3-223	ENST00000611659	SPRR2E	P22531	72 aa		3.24	□□□□□ -1.89
TPM3-223	ENST00000611659	SPRR2B	P35325	72 aa		3.24	□□□□□ -1.89
TPM3-223	ENST00000611659	SPRR2A	P35326	72 aa		3.24	□□□□□ -1.89
TPM3-223	ENST00000611659	KRTAP6-2	Q3LI66	62 aa		3.24	□□□□□ -1.89
TPM3-223	ENST00000611659	KRTAP5-3	Q6L8H2	238 aa		3.12	□□□□□ -1.91
TPM3-223	ENST00000611659	KRTAP5-9	P26371	169 aa		3.1	□□□□□ -1.91
TPM3-223	ENST00000611659	SPRR2D	P22532	72 aa		3.08	□□□□□ -1.92
TPM3-223	ENST00000611659	KRTAP6-3	Q3LI67	103 aa		3.06	□□□□□ -1.92
TPM3-223	ENST00000611659	MT3	P25713	68 aa		3.01	□□□□□ -1.93
TPM3-223	ENST00000611659	KRTAP2-2	Q9BYT5	123 aa		3.01	□□□□□ -1.93
TPM3-223	ENST00000611659	MT4	P47944	62 aa		2.84	□□□□□ -1.96
TPM3-223	ENST00000611659	NEB	P20929	6669 aa		2.7	□□□□□ -1.98
TPM3-223	ENST00000611659	LCE1E	Q5T753	118 aa		2.68	□□□□□ -1.98
TPM3-223	ENST00000611659	KRTAP5-4	Q6L8H1	288 aa		2.68	□□□□□ -1.98
TPM3-223	ENST00000611659	HMCN1	Q96RW7	5635 aa		2.63	□□□□□ -1.99
TPM3-223	ENST00000611659	KRTAP20-2	Q3LI61	65 aa		2.63	□□□□□ -1.99
TPM3-223	ENST00000611659	MUC5AC	P98088	5654 aa		2.6	□□□□□ -1.99
TPM3-223	ENST00000611659	LCE1B	Q5T7P3	118 aa		2.54	□□□□□ -2
TPM3-223	ENST00000611659	KRTAP5-2	Q701N4	177 aa		2.51	□□□□□ -2.01
TPM3-223	ENST00000611659	KRTAP5-10	Q6L8G5	202 aa		2.46	□□□□□ -2.02
TPM3-223	ENST00000611659	KRTAP5-11	Q6L8G4	156 aa		2.42	□□□□□ -2.02
TPM3-223	ENST00000611659	KRTAP20-1	Q3LI63	56 aa		2.39	□□□□□ -2.03
TPM3-223	ENST00000611659	KRTAP5-1	Q6L8H4	278 aa		2.34	□□□□□ -2.04
TPM3-223	ENST00000611659	MUC19	Q7Z5P9	8384 aa		2.3	□□□□□ -2.04
TPM3-223	ENST00000611659	LCE1F	Q5T754	118 aa		2.24	□□□□□ -2.05
TPM3-223	ENST00000611659	LCE1C	Q5T751	118 aa		2.22	□□□□□ -2.05
TPM3-223	ENST00000611659	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.2	□□□□□ -2.06
TPM3-223	ENST00000611659	KRTAP21-2	Q3LI59	83 aa		2.17	□□□□□ -2.06
TPM3-223	ENST00000611659	KRTAP4-4	Q9BYR3	166 aa		2.17	□□□□□ -2.06
TPM3-223	ENST00000611659	KRTAP21-1	Q3LI58	79 aa		2.1	□□□□□ -2.07
TPM3-223	ENST00000611659	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.06	□□□□□ -2.08
TPM3-223	ENST00000611659	AHNAK2	Q8IVF2	5795 aa		2.05	□□□□□ -2.08
TPM3-223	ENST00000611659	KRTAP5-8	O75690	187 aa		2.04	□□□□□ -2.08
TPM3-223	ENST00000611659	GPR98	Q8WXG9	6306 aa		1.89	□□□□□ -2.11
TPM3-223	ENST00000611659	KRTAP5-7	Q6L8G8	165 aa		1.86	□□□□□ -2.11
TPM3-223	ENST00000611659	PHGR1	C9JFL3	82 aa		1.63	□□□□□ -2.15
TPM3-223	ENST00000611659	AHNAK	Q09666	5890 aa	Known RBP	1.5	□□□□□ -2.17
TPM3-223	ENST00000611659	MUC16	Q8WXI7	14507 aa		1.15	□□□□□ -2.23

Retrieved 77 of 20,778 RNA–protein pairs in 85.4 ms