RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 MT1MQ8N339 61 aa2.71□□□□□ -1.98
CUX1-219ENST00000606749 COX7CP15954 63 aa2.7□□□□□ -1.98
CUX1-219ENST00000606749 MT1LQ93083 61 aa2.7□□□□□ -1.98
CUX1-219ENST00000606749 H7BZZ5 65 aa2.69□□□□□ -1.98
CUX1-219ENST00000606749 MT4P47944 62 aa2.68□□□□□ -1.98
CUX1-219ENST00000606749 SMIM26A0A096LP01 95 aa2.67□□□□□ -1.98
CUX1-219ENST00000606749 PCP4P48539 62 aa2.67□□□□□ -1.98
CUX1-219ENST00000606749 A0A1B0GU69 56 aa2.66□□□□□ -1.98
CUX1-219ENST00000606749 A8MU10 97 aa2.66□□□□□ -1.98
CUX1-219ENST00000606749 LCE3AQ5TA76 89 aa2.66□□□□□ -1.98
CUX1-219ENST00000606749 KRTAP4-3Q9BYR4 195 aa2.66□□□□□ -1.98
CUX1-219ENST00000606749 C10orf95Q9H7T3 257 aa2.66□□□□□ -1.98
CUX1-219ENST00000606749 TNP1P09430 55 aa2.64□□□□□ -1.99
CUX1-219ENST00000606749 KRTAP5-4Q6L8H1 288 aa2.64□□□□□ -1.99
CUX1-219ENST00000606749 HMCN1Q96RW7 5635 aa2.6□□□□□ -1.99
CUX1-219ENST00000606749 KRTAP5-10Q6L8G5 202 aa2.58□□□□□ -2
CUX1-219ENST00000606749 KRTAP12-3P60328 96 aa2.56□□□□□ -2
CUX1-219ENST00000606749 ANAPC13Q9BS18 74 aa2.54□□□□□ -2
CUX1-219ENST00000606749 PRR15LQ9BU68 103 aa2.54□□□□□ -2
CUX1-219ENST00000606749 AHNAK2Q8IVF2 5795 aa2.54□□□□□ -2
CUX1-219ENST00000606749 A0A0A0MQY5 61 aa2.52□□□□□ -2.01
CUX1-219ENST00000606749 LINC01558Q9Y6Z2 57 aa2.52□□□□□ -2.01
CUX1-219ENST00000606749 CCDC179H3BU77 68 aa2.5□□□□□ -2.01
CUX1-219ENST00000606749 KRTAP5-5Q701N2 237 aaPredicted RBP2.5□□□□□ -2.01
CUX1-219ENST00000606749 ATP5EP56381 51 aaPredicted RBP2.49□□□□□ -2.01
CUX1-219ENST00000606749 KRTAP20-2Q3LI61 65 aa2.49□□□□□ -2.01
CUX1-219ENST00000606749 KRTAP5-7Q6L8G8 165 aa2.49□□□□□ -2.01
CUX1-219ENST00000606749 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.49□□□□□ -2.01
CUX1-219ENST00000606749 SPRR5A0A1B0GTR4 108 aa2.47□□□□□ -2.01
CUX1-219ENST00000606749 UQCR11O14957 56 aa2.47□□□□□ -2.01
CUX1-219ENST00000606749 KRTAP12-4P60329 112 aa2.45□□□□□ -2.02
CUX1-219ENST00000606749 KRTAP25-1Q3LHN0 102 aa2.45□□□□□ -2.02
CUX1-219ENST00000606749 MIR22HGQ0VDD5 57 aa2.41□□□□□ -2.02
CUX1-219ENST00000606749 SYNE1Q8NF91 8797 aaKnown RBP2.38□□□□□ -2.03
CUX1-219ENST00000606749 MT3P25713 68 aa2.38□□□□□ -2.03
CUX1-219ENST00000606749 TMEM258P61165 79 aa2.38□□□□□ -2.03
CUX1-219ENST00000606749 K7ERS5 55 aa2.37□□□□□ -2.03
CUX1-219ENST00000606749 LCE3CQ5T5A8 94 aa2.36□□□□□ -2.03
CUX1-219ENST00000606749 KRTAP5-11Q6L8G4 156 aa2.33□□□□□ -2.04
CUX1-219ENST00000606749 PSPHP1O15172 72 aa2.31□□□□□ -2.04
CUX1-219ENST00000606749 KRTAP6-1Q3LI64 71 aa2.3□□□□□ -2.04
CUX1-219ENST00000606749 KRTAP5-2Q701N4 177 aa2.3□□□□□ -2.04
CUX1-219ENST00000606749 MT1AP04731 61 aa2.29□□□□□ -2.04
CUX1-219ENST00000606749 V9GYY9 64 aa2.29□□□□□ -2.04
CUX1-219ENST00000606749 Q1T7F1 81 aa2.28□□□□□ -2.04
CUX1-219ENST00000606749 KRTAP9-6A8MVA2 160 aa2.23□□□□□ -2.05
CUX1-219ENST00000606749 KRTAP5-8O75690 187 aa2.23□□□□□ -2.05
CUX1-219ENST00000606749 CDC42SE1Q9NRR8 79 aa2.23□□□□□ -2.05
CUX1-219ENST00000606749 A6NED7 52 aa2.21□□□□□ -2.06
CUX1-219ENST00000606749 KRTAP6-2Q3LI66 62 aa2.21□□□□□ -2.06
CUX1-219ENST00000606749 RPS28P62857 69 aaKnown RBP2.2□□□□□ -2.06
CUX1-219ENST00000606749 ROMO1P60602 79 aa2.19□□□□□ -2.06
CUX1-219ENST00000606749 OBSCNQ5VST9 7968 aa2.15□□□□□ -2.07
CUX1-219ENST00000606749 NDUFAF8A1L188 74 aa2.14□□□□□ -2.07
CUX1-219ENST00000606749 KRTAP5-1Q6L8H4 278 aa2.14□□□□□ -2.07
CUX1-219ENST00000606749 LCE1EQ5T753 118 aa2.11□□□□□ -2.07
CUX1-219ENST00000606749 PRAC1Q96KF2 57 aa2.1□□□□□ -2.07
CUX1-219ENST00000606749 KRTAP4-4Q9BYR3 166 aa2.1□□□□□ -2.07
CUX1-219ENST00000606749 MUC5ACP98088 5654 aa2.08□□□□□ -2.08
CUX1-219ENST00000606749 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
CUX1-219ENST00000606749 AHNAKQ09666 5890 aaKnown RBP2.05□□□□□ -2.08
CUX1-219ENST00000606749 LCE1FQ5T754 118 aa2.01□□□□□ -2.09
CUX1-219ENST00000606749 LCE1BQ5T7P3 118 aa1.85□□□□□ -2.11
CUX1-219ENST00000606749 LCE1CQ5T751 118 aa1.82□□□□□ -2.12
CUX1-219ENST00000606749 BRK1Q8WUW1 75 aa1.77□□□□□ -2.13
CUX1-219ENST00000606749 LCE3EQ5T5B0 92 aa1.73□□□□□ -2.13
CUX1-219ENST00000606749 LCE3DQ9BYE3 92 aa1.68□□□□□ -2.14
CUX1-219ENST00000606749 PMAIP1Q13794 54 aa1.67□□□□□ -2.14
CUX1-219ENST00000606749 KRTAP21-2Q3LI59 83 aa1.52□□□□□ -2.17
CUX1-219ENST00000606749 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
CUX1-219ENST00000606749 PRO0628Q9UI54 55 aa1.42□□□□□ -2.18
CUX1-219ENST00000606749 LUZP6Q538Z0 58 aa1.4□□□□□ -2.19
CUX1-219ENST00000606749 KTN1-AS1Q86SY8 53 aa1.39□□□□□ -2.19
CUX1-219ENST00000606749 MUC19Q7Z5P9 8384 aa1.31□□□□□ -2.2
CUX1-219ENST00000606749 KRTAP21-1Q3LI58 79 aa1.14□□□□□ -2.23
CUX1-219ENST00000606749 PRM1P04553 51 aa1.12□□□□□ -2.23
CUX1-219ENST00000606749 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
CUX1-219ENST00000606749 INE1O15225 51 aa0.76□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 9.9 ms