RNA–Protein interactions for RNA: ENST00000600523.5

SRRM1-223, Transcript of serine and arginine repetitive matrix 1, human

TSL 5

Gene SRRM1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRRM1-223	ENST00000600523	KRTAP2-4	Q9BYR9	128 aa		4.83	□□□□□ -1.64
SRRM1-223	ENST00000600523	KRTAP19-5	Q3LI72	72 aa		4.81	□□□□□ -1.64
SRRM1-223	ENST00000600523	LCE3A	Q5TA76	89 aa		4.81	□□□□□ -1.64
SRRM1-223	ENST00000600523	CDC42SE1	Q9NRR8	79 aa		4.81	□□□□□ -1.64
SRRM1-223	ENST00000600523	MT1E	P04732	61 aa		4.8	□□□□□ -1.64
SRRM1-223	ENST00000600523	KRTAP19-3	Q7Z4W3	81 aa		4.75	□□□□□ -1.65
SRRM1-223	ENST00000600523	PP632	Q6XCG6	107 aa		4.72	□□□□□ -1.65
SRRM1-223	ENST00000600523	ROMO1	P60602	79 aa		4.7	□□□□□ -1.66
SRRM1-223	ENST00000600523	LCE5A	Q5TCM9	118 aa		4.7	□□□□□ -1.66
SRRM1-223	ENST00000600523	MT1G	P13640	62 aa		4.69	□□□□□ -1.66
SRRM1-223	ENST00000600523	LCE3B	Q5TA77	95 aa		4.69	□□□□□ -1.66
SRRM1-223	ENST00000600523	KRTAP2-2	Q9BYT5	123 aa		4.69	□□□□□ -1.66
SRRM1-223	ENST00000600523	KRTAP2-1	Q9BYU5	128 aa		4.69	□□□□□ -1.66
SRRM1-223	ENST00000600523	KRTAP12-3	P60328	96 aa		4.68	□□□□□ -1.66
SRRM1-223	ENST00000600523	MT1L	Q93083	61 aa		4.63	□□□□□ -1.67
SRRM1-223	ENST00000600523	PRAC1	Q96KF2	57 aa		4.62	□□□□□ -1.67
SRRM1-223	ENST00000600523	KRTAP4-12	Q9BQ66	201 aa		4.6	□□□□□ -1.67
SRRM1-223	ENST00000600523	KRTAP19-4	Q3LI73	84 aa		4.58	□□□□□ -1.68
SRRM1-223	ENST00000600523	BRK1	Q8WUW1	75 aa		4.57	□□□□□ -1.68
SRRM1-223	ENST00000600523	MT1M	Q8N339	61 aa		4.56	□□□□□ -1.68
SRRM1-223	ENST00000600523	KRTAP9-9	Q9BYP9	154 aa		4.47	□□□□□ -1.69
SRRM1-223	ENST00000600523	KRTAP9-4	Q9BYQ2	154 aa		4.47	□□□□□ -1.69
SRRM1-223	ENST00000600523	DST	Q03001	7570 aa	Known RBP	4.46	□□□□□ -1.7
SRRM1-223	ENST00000600523	KRTAP15-1	Q3LI76	137 aa		4.45	□□□□□ -1.7
SRRM1-223	ENST00000600523	KRTAP4-3	Q9BYR4	195 aa		4.4	□□□□□ -1.71
SRRM1-223	ENST00000600523	KRTAP4-7	Q9BYR0	210 aa		4.36	□□□□□ -1.71
SRRM1-223	ENST00000600523	PMAIP1	Q13794	54 aa		4.32	□□□□□ -1.72
SRRM1-223	ENST00000600523	LCE3C	Q5T5A8	94 aa		4.31	□□□□□ -1.72
SRRM1-223	ENST00000600523	LCE4A	Q5TA78	99 aa		4.31	□□□□□ -1.72
SRRM1-223	ENST00000600523	KRTAP4-9	Q9BYQ8	210 aa		4.26	□□□□□ -1.73
SRRM1-223	ENST00000600523	LCE1D	Q5T752	114 aa		4.24	□□□□□ -1.73
SRRM1-223	ENST00000600523	MT4	P47944	62 aa		4.21	□□□□□ -1.74
SRRM1-223	ENST00000600523	KRTAP5-4	Q6L8H1	288 aa		4.2	□□□□□ -1.74
SRRM1-223	ENST00000600523	PRO0628	Q9UI54	55 aa		4.16	□□□□□ -1.74
SRRM1-223	ENST00000600523	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.12	□□□□□ -1.75
SRRM1-223	ENST00000600523	KRTAP12-4	P60329	112 aa		4.09	□□□□□ -1.75
SRRM1-223	ENST00000600523	NDUFAF8	A1L188	74 aa		4.04	□□□□□ -1.76
SRRM1-223	ENST00000600523	HMCN1	Q96RW7	5635 aa		4.02	□□□□□ -1.77
SRRM1-223	ENST00000600523	SPRR5	A0A1B0GTR4	108 aa		4.01	□□□□□ -1.77
SRRM1-223	ENST00000600523	KRTAP4-2	Q9BYR5	136 aa		4.01	□□□□□ -1.77
SRRM1-223	ENST00000600523	KRTAP4-11	Q9BYQ6	195 aa		3.98	□□□□□ -1.77
SRRM1-223	ENST00000600523	MT1A	P04731	61 aa		3.97	□□□□□ -1.77
SRRM1-223	ENST00000600523	KRTAP9-6	A8MVA2	160 aa		3.96	□□□□□ -1.78
SRRM1-223	ENST00000600523	KRTAP20-2	Q3LI61	65 aa		3.96	□□□□□ -1.78
SRRM1-223	ENST00000600523	KTN1-AS1	Q86SY8	53 aa		3.94	□□□□□ -1.78
SRRM1-223	ENST00000600523	GPR98	Q8WXG9	6306 aa		3.91	□□□□□ -1.78
SRRM1-223	ENST00000600523	KRTAP6-1	Q3LI64	71 aa		3.89	□□□□□ -1.79
SRRM1-223	ENST00000600523	SYNE1	Q8NF91	8797 aa	Known RBP	3.87	□□□□□ -1.79
SRRM1-223	ENST00000600523	LUZP6	Q538Z0	58 aa		3.83	□□□□□ -1.8
SRRM1-223	ENST00000600523	KRTAP5-3	Q6L8H2	238 aa		3.8	□□□□□ -1.8
SRRM1-223	ENST00000600523	AHNAK2	Q8IVF2	5795 aa		3.77	□□□□□ -1.81
SRRM1-223	ENST00000600523	KRTAP5-10	Q6L8G5	202 aa		3.76	□□□□□ -1.81
SRRM1-223	ENST00000600523	KRTAP5-2	Q701N4	177 aa		3.71	□□□□□ -1.82
SRRM1-223	ENST00000600523	KRTAP6-2	Q3LI66	62 aa		3.7	□□□□□ -1.82
SRRM1-223	ENST00000600523	MT3	P25713	68 aa		3.66	□□□□□ -1.82
SRRM1-223	ENST00000600523	KRTAP5-7	Q6L8G8	165 aa		3.6	□□□□□ -1.83
SRRM1-223	ENST00000600523	KRTAP5-8	O75690	187 aa		3.42	□□□□□ -1.86
SRRM1-223	ENST00000600523	OBSCN	Q5VST9	7968 aa		3.4	□□□□□ -1.86
SRRM1-223	ENST00000600523	LCE1F	Q5T754	118 aa		3.3	□□□□□ -1.88
SRRM1-223	ENST00000600523	LCE1E	Q5T753	118 aa		3.28	□□□□□ -1.88
SRRM1-223	ENST00000600523	KRTAP5-1	Q6L8H4	278 aa		3.27	□□□□□ -1.89
SRRM1-223	ENST00000600523	LCE3D	Q9BYE3	92 aa		3.19	□□□□□ -1.9
SRRM1-223	ENST00000600523	MUC5AC	P98088	5654 aa		3.14	□□□□□ -1.91
SRRM1-223	ENST00000600523	LCE1B	Q5T7P3	118 aa		3.09	□□□□□ -1.91
SRRM1-223	ENST00000600523	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.05	□□□□□ -1.92
SRRM1-223	ENST00000600523	AHNAK	Q09666	5890 aa	Known RBP	3.05	□□□□□ -1.92
SRRM1-223	ENST00000600523	LCE3E	Q5T5B0	92 aa		3.04	□□□□□ -1.92
SRRM1-223	ENST00000600523	LCE1C	Q5T751	118 aa		3.03	□□□□□ -1.92
SRRM1-223	ENST00000600523	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.77	□□□□□ -1.97
SRRM1-223	ENST00000600523	KRTAP5-11	Q6L8G4	156 aa		2.72	□□□□□ -1.97
SRRM1-223	ENST00000600523	INE1	O15225	51 aa		2.62	□□□□□ -1.99
SRRM1-223	ENST00000600523	KRTAP21-2	Q3LI59	83 aa		2.55	□□□□□ -2
SRRM1-223	ENST00000600523	PRM1	P04553	51 aa		2.39	□□□□□ -2.03
SRRM1-223	ENST00000600523	PHGR1	C9JFL3	82 aa		2.34	□□□□□ -2.03
SRRM1-223	ENST00000600523	KRTAP4-4	Q9BYR3	166 aa		2.3	□□□□□ -2.04
SRRM1-223	ENST00000600523	MUC19	Q7Z5P9	8384 aa		2.1	□□□□□ -2.07
SRRM1-223	ENST00000600523	KRTAP21-1	Q3LI58	79 aa		1.7	□□□□□ -2.14
SRRM1-223	ENST00000600523	MUC16	Q8WXI7	14507 aa		1.43	□□□□□ -2.18

Retrieved 78 of 20,778 RNA–protein pairs in 74.1 ms