RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320	KRTAP2-2	Q9BYT5	123 aa		7.28	□□□□□ -1.24
SHKBP1-222	ENST00000600320	KRTAP2-1	Q9BYU5	128 aa		7.28	□□□□□ -1.24
SHKBP1-222	ENST00000600320	KRTAP23-1	A1A580	65 aa		7.26	□□□□□ -1.25
SHKBP1-222	ENST00000600320	KRTAP12-3	P60328	96 aa		7.23	□□□□□ -1.25
SHKBP1-222	ENST00000600320	KRTAP19-3	Q7Z4W3	81 aa		7.21	□□□□□ -1.26
SHKBP1-222	ENST00000600320	SPRR2D	P22532	72 aa		7.2	□□□□□ -1.26
SHKBP1-222	ENST00000600320	MT1L	Q93083	61 aa		7.17	□□□□□ -1.26
SHKBP1-222	ENST00000600320	LCE5A	Q5TCM9	118 aa		7.16	□□□□□ -1.26
SHKBP1-222	ENST00000600320	PMAIP1	Q13794	54 aa		7.1	□□□□□ -1.27
SHKBP1-222	ENST00000600320	PP632	Q6XCG6	107 aa		7.1	□□□□□ -1.27
SHKBP1-222	ENST00000600320	MT1G	P13640	62 aa		7.08	□□□□□ -1.28
SHKBP1-222	ENST00000600320	PRO0628	Q9UI54	55 aa		7.05	□□□□□ -1.28
SHKBP1-222	ENST00000600320	LCE3B	Q5TA77	95 aa		7.02	□□□□□ -1.29
SHKBP1-222	ENST00000600320	MT1M	Q8N339	61 aa		7.01	□□□□□ -1.29
SHKBP1-222	ENST00000600320	KRTAP15-1	Q3LI76	137 aa		6.94	□□□□□ -1.3
SHKBP1-222	ENST00000600320	SVIP	Q8NHG7	77 aa		6.93	□□□□□ -1.3
SHKBP1-222	ENST00000600320	KRTAP4-7	Q9BYR0	210 aa		6.89	□□□□□ -1.31
SHKBP1-222	ENST00000600320	KRTAP4-3	Q9BYR4	195 aa		6.88	□□□□□ -1.31
SHKBP1-222	ENST00000600320	PRAC1	Q96KF2	57 aa		6.79	□□□□□ -1.32
SHKBP1-222	ENST00000600320	DST	Q03001	7570 aa	Known RBP	6.79	□□□□□ -1.32
SHKBP1-222	ENST00000600320	GPR98	Q8WXG9	6306 aa		6.78	□□□□□ -1.32
SHKBP1-222	ENST00000600320	KRTAP19-4	Q3LI73	84 aa		6.76	□□□□□ -1.33
SHKBP1-222	ENST00000600320	LCE3C	Q5T5A8	94 aa		6.71	□□□□□ -1.34
SHKBP1-222	ENST00000600320	KTN1-AS1	Q86SY8	53 aa		6.62	□□□□□ -1.35
SHKBP1-222	ENST00000600320	KRTAP4-9	Q9BYQ8	210 aa		6.58	□□□□□ -1.36
SHKBP1-222	ENST00000600320	LOC100996750	A0A140TA64	210 aa		6.49	□□□□□ -1.37
SHKBP1-222	ENST00000600320	LCE1D	Q5T752	114 aa		6.41	□□□□□ -1.38
SHKBP1-222	ENST00000600320	KRTAP9-6	A8MVA2	160 aa		6.38	□□□□□ -1.39
SHKBP1-222	ENST00000600320	LCE4A	Q5TA78	99 aa		6.37	□□□□□ -1.39
SHKBP1-222	ENST00000600320	KRTAP5-5	Q701N2	237 aa	Predicted RBP	6.37	□□□□□ -1.39
SHKBP1-222	ENST00000600320	KRTAP5-4	Q6L8H1	288 aa		6.36	□□□□□ -1.39
SHKBP1-222	ENST00000600320	HMCN1	Q96RW7	5635 aa		6.3	□□□□□ -1.4
SHKBP1-222	ENST00000600320	MT4	P47944	62 aa		6.29	□□□□□ -1.4
SHKBP1-222	ENST00000600320	AHNAK2	Q8IVF2	5795 aa		6.17	□□□□□ -1.42
SHKBP1-222	ENST00000600320	KRTAP4-6	Q9BYQ5	205 aa		6.14	□□□□□ -1.43
SHKBP1-222	ENST00000600320	KRTAP5-10	Q6L8G5	202 aa		6.13	□□□□□ -1.43
SHKBP1-222	ENST00000600320	SPRR5	A0A1B0GTR4	108 aa		6.11	□□□□□ -1.43
SHKBP1-222	ENST00000600320	MT1A	P04731	61 aa		6.1	□□□□□ -1.43
SHKBP1-222	ENST00000600320	SYNE1	Q8NF91	8797 aa	Known RBP	6.07	□□□□□ -1.44
SHKBP1-222	ENST00000600320	KRTAP6-1	Q3LI64	71 aa		6.05	□□□□□ -1.44
SHKBP1-222	ENST00000600320	KRTAP12-4	P60329	112 aa		6.01	□□□□□ -1.45
SHKBP1-222	ENST00000600320	KRTAP20-2	Q3LI61	65 aa		5.96	□□□□□ -1.46
SHKBP1-222	ENST00000600320	KRTAP5-7	Q6L8G8	165 aa		5.95	□□□□□ -1.46
SHKBP1-222	ENST00000600320	KRTAP5-3	Q6L8H2	238 aa		5.91	□□□□□ -1.46
SHKBP1-222	ENST00000600320	KRTAP9-4	Q9BYQ2	154 aa		5.83	□□□□□ -1.48
SHKBP1-222	ENST00000600320	KRTAP5-2	Q701N4	177 aa		5.68	□□□□□ -1.5
SHKBP1-222	ENST00000600320	KRTAP6-2	Q3LI66	62 aa		5.66	□□□□□ -1.5
SHKBP1-222	ENST00000600320		H3BS24	57 aa		5.54	□□□□□ -1.52
SHKBP1-222	ENST00000600320	LUZP6	Q538Z0	58 aa		5.53	□□□□□ -1.52
SHKBP1-222	ENST00000600320	MT3	P25713	68 aa		5.52	□□□□□ -1.53
SHKBP1-222	ENST00000600320	KRTAP4-11	Q9BYQ6	195 aa		5.41	□□□□□ -1.54
SHKBP1-222	ENST00000600320	KRTAP5-8	O75690	187 aa		5.24	□□□□□ -1.57
SHKBP1-222	ENST00000600320		A0A0A0MQY5	61 aa		5.23	□□□□□ -1.57
SHKBP1-222	ENST00000600320	MUC5AC	P98088	5654 aa		5.17	□□□□□ -1.58
SHKBP1-222	ENST00000600320	OBSCN	Q5VST9	7968 aa		5.17	□□□□□ -1.58
SHKBP1-222	ENST00000600320	AHNAK	Q09666	5890 aa	Known RBP	5.16	□□□□□ -1.58
SHKBP1-222	ENST00000600320	MUC5B	Q9HC84	5762 aa	Predicted RBP	5.11	□□□□□ -1.59
SHKBP1-222	ENST00000600320	NDUFAF8	A1L188	74 aa		5.03	□□□□□ -1.6
SHKBP1-222	ENST00000600320	KRTAP9-9	Q9BYP9	154 aa		5.01	□□□□□ -1.61
SHKBP1-222	ENST00000600320	KRTAP5-1	Q6L8H4	278 aa		4.99	□□□□□ -1.61
SHKBP1-222	ENST00000600320	LCE1E	Q5T753	118 aa		4.93	□□□□□ -1.62
SHKBP1-222	ENST00000600320	LCE3D	Q9BYE3	92 aa		4.92	□□□□□ -1.62
SHKBP1-222	ENST00000600320	LCE3E	Q5T5B0	92 aa		4.74	□□□□□ -1.65
SHKBP1-222	ENST00000600320	KRTAP4-2	Q9BYR5	136 aa		4.67	□□□□□ -1.66
SHKBP1-222	ENST00000600320	LCE1B	Q5T7P3	118 aa		4.64	□□□□□ -1.67
SHKBP1-222	ENST00000600320	LCE1C	Q5T751	118 aa		4.58	□□□□□ -1.68
SHKBP1-222	ENST00000600320	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.24	□□□□□ -1.73
SHKBP1-222	ENST00000600320	KRTAP5-11	Q6L8G4	156 aa		4.11	□□□□□ -1.75
SHKBP1-222	ENST00000600320	INE1	O15225	51 aa		4.08	□□□□□ -1.76
SHKBP1-222	ENST00000600320	KRTAP4-12	Q9BQ66	201 aa		4.04	□□□□□ -1.76
SHKBP1-222	ENST00000600320	KRTAP21-2	Q3LI59	83 aa		3.98	□□□□□ -1.77
SHKBP1-222	ENST00000600320	PRM1	P04553	51 aa		3.89	□□□□□ -1.79
SHKBP1-222	ENST00000600320	LCE1F	Q5T754	118 aa		3.87	□□□□□ -1.79
SHKBP1-222	ENST00000600320	KRTAP4-4	Q9BYR3	166 aa		3.59	□□□□□ -1.83
SHKBP1-222	ENST00000600320	PHGR1	C9JFL3	82 aa		3.57	□□□□□ -1.84
SHKBP1-222	ENST00000600320	MUC19	Q7Z5P9	8384 aa		3.15	□□□□□ -1.9
SHKBP1-222	ENST00000600320	KRTAP21-1	Q3LI58	79 aa		2.73	□□□□□ -1.97
SHKBP1-222	ENST00000600320	MUC16	Q8WXI7	14507 aa		2.29	□□□□□ -2.04

Retrieved 78 of 20,778 RNA–protein pairs in 100.5 ms