RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TNP1P09430 55 aa5.71□□□□□ -1.5
LIG1-219ENST00000600055 KRTAP19-7Q3SYF9 63 aa5.71□□□□□ -1.5
LIG1-219ENST00000600055 BRK1Q8WUW1 75 aa5.71□□□□□ -1.5
LIG1-219ENST00000600055 MT1EP04732 61 aa5.65□□□□□ -1.5
LIG1-219ENST00000600055 KRTAP19-5Q3LI72 72 aa5.63□□□□□ -1.51
LIG1-219ENST00000600055 KRTAP25-1Q3LHN0 102 aa5.61□□□□□ -1.51
LIG1-219ENST00000600055 ROMO1P60602 79 aa5.59□□□□□ -1.51
LIG1-219ENST00000600055 LCE3AQ5TA76 89 aa5.59□□□□□ -1.51
LIG1-219ENST00000600055 KRTAP4-12Q9BQ66 201 aa5.59□□□□□ -1.51
LIG1-219ENST00000600055 LCE5AQ5TCM9 118 aa5.55□□□□□ -1.52
LIG1-219ENST00000600055 KRTAP19-3Q7Z4W3 81 aa5.55□□□□□ -1.52
LIG1-219ENST00000600055 KRTAP2-2Q9BYT5 123 aa5.55□□□□□ -1.52
LIG1-219ENST00000600055 KRTAP2-1Q9BYU5 128 aa5.55□□□□□ -1.52
LIG1-219ENST00000600055 LCE3BQ5TA77 95 aa5.54□□□□□ -1.52
LIG1-219ENST00000600055 MT1GP13640 62 aa5.43□□□□□ -1.54
LIG1-219ENST00000600055 PMAIP1Q13794 54 aa5.43□□□□□ -1.54
LIG1-219ENST00000600055 MT1LQ93083 61 aa5.43□□□□□ -1.54
LIG1-219ENST00000600055 PRO0628Q9UI54 55 aa5.43□□□□□ -1.54
LIG1-219ENST00000600055 PP632Q6XCG6 107 aa5.39□□□□□ -1.55
LIG1-219ENST00000600055 MT1MQ8N339 61 aa5.37□□□□□ -1.55
LIG1-219ENST00000600055 KRTAP12-3P60328 96 aa5.35□□□□□ -1.55
LIG1-219ENST00000600055 KRTAP15-1Q3LI76 137 aa5.34□□□□□ -1.55
LIG1-219ENST00000600055 LCE4AQ5TA78 99 aa5.33□□□□□ -1.56
LIG1-219ENST00000600055 KRTAP9-9Q9BYP9 154 aa5.31□□□□□ -1.56
LIG1-219ENST00000600055 KRTAP9-4Q9BYQ2 154 aa5.31□□□□□ -1.56
LIG1-219ENST00000600055 DSTQ03001 7570 aaKnown RBP5.29□□□□□ -1.56
LIG1-219ENST00000600055 KRTAP4-3Q9BYR4 195 aa5.28□□□□□ -1.56
LIG1-219ENST00000600055 KRTAP4-7Q9BYR0 210 aa5.22□□□□□ -1.57
LIG1-219ENST00000600055 KRTAP4-9Q9BYQ8 210 aa5.14□□□□□ -1.59
LIG1-219ENST00000600055 LCE1DQ5T752 114 aa5.11□□□□□ -1.59
LIG1-219ENST00000600055 KTN1-AS1Q86SY8 53 aa5.06□□□□□ -1.6
LIG1-219ENST00000600055 MT4P47944 62 aa5□□□□□ -1.61
LIG1-219ENST00000600055 KRTAP5-4Q6L8H1 288 aa5□□□□□ -1.61
LIG1-219ENST00000600055 PRAC1Q96KF2 57 aa4.99□□□□□ -1.61
LIG1-219ENST00000600055 LCE3CQ5T5A8 94 aa4.95□□□□□ -1.62
LIG1-219ENST00000600055 KRTAP5-5Q701N2 237 aaPredicted RBP4.9□□□□□ -1.63
LIG1-219ENST00000600055 HMCN1Q96RW7 5635 aa4.89□□□□□ -1.63
LIG1-219ENST00000600055 GPR98Q8WXG9 6306 aa4.83□□□□□ -1.64
LIG1-219ENST00000600055 KRTAP4-11Q9BYQ6 195 aa4.79□□□□□ -1.64
LIG1-219ENST00000600055 KRTAP4-2Q9BYR5 136 aa4.74□□□□□ -1.65
LIG1-219ENST00000600055 KRTAP20-2Q3LI61 65 aa4.71□□□□□ -1.66
LIG1-219ENST00000600055 KRTAP9-6A8MVA2 160 aa4.7□□□□□ -1.66
LIG1-219ENST00000600055 KRTAP12-4P60329 112 aa4.7□□□□□ -1.66
LIG1-219ENST00000600055 SPRR5A0A1B0GTR4 108 aa4.68□□□□□ -1.66
LIG1-219ENST00000600055 AHNAK2Q8IVF2 5795 aa4.67□□□□□ -1.66
LIG1-219ENST00000600055 SYNE1Q8NF91 8797 aaKnown RBP4.65□□□□□ -1.66
LIG1-219ENST00000600055 MT1AP04731 61 aa4.61□□□□□ -1.67
LIG1-219ENST00000600055 KRTAP6-1Q3LI64 71 aa4.6□□□□□ -1.67
LIG1-219ENST00000600055 KRTAP5-3Q6L8H2 238 aa4.57□□□□□ -1.68
LIG1-219ENST00000600055 KRTAP5-10Q6L8G5 202 aa4.56□□□□□ -1.68
LIG1-219ENST00000600055 NDUFAF8A1L188 74 aa4.43□□□□□ -1.7
LIG1-219ENST00000600055 KRTAP5-2Q701N4 177 aa4.41□□□□□ -1.7
LIG1-219ENST00000600055 KRTAP6-2Q3LI66 62 aa4.35□□□□□ -1.71
LIG1-219ENST00000600055 KRTAP5-7Q6L8G8 165 aa4.35□□□□□ -1.71
LIG1-219ENST00000600055 LUZP6Q538Z0 58 aa4.34□□□□□ -1.71
LIG1-219ENST00000600055 MT3P25713 68 aa4.26□□□□□ -1.73
LIG1-219ENST00000600055 KRTAP5-8O75690 187 aa4.11□□□□□ -1.75
LIG1-219ENST00000600055 OBSCNQ5VST9 7968 aa4.01□□□□□ -1.77
LIG1-219ENST00000600055 KRTAP5-1Q6L8H4 278 aa3.93□□□□□ -1.78
LIG1-219ENST00000600055 LCE1FQ5T754 118 aa3.89□□□□□ -1.79
LIG1-219ENST00000600055 LCE1EQ5T753 118 aa3.79□□□□□ -1.8
LIG1-219ENST00000600055 MUC5BQ9HC84 5762 aaPredicted RBP3.79□□□□□ -1.8
LIG1-219ENST00000600055 MUC5ACP98088 5654 aa3.79□□□□□ -1.8
LIG1-219ENST00000600055 AHNAKQ09666 5890 aaKnown RBP3.75□□□□□ -1.81
LIG1-219ENST00000600055 LCE3DQ9BYE3 92 aa3.64□□□□□ -1.83
LIG1-219ENST00000600055 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
LIG1-219ENST00000600055 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
LIG1-219ENST00000600055 LCE3EQ5T5B0 92 aa3.5□□□□□ -1.85
LIG1-219ENST00000600055 INE1O15225 51 aa3.26□□□□□ -1.89
LIG1-219ENST00000600055 KRTAP5-11Q6L8G4 156 aa3.23□□□□□ -1.89
LIG1-219ENST00000600055 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.23□□□□□ -1.89
LIG1-219ENST00000600055 KRTAP21-2Q3LI59 83 aa3.02□□□□□ -1.93
LIG1-219ENST00000600055 PRM1P04553 51 aa2.83□□□□□ -1.96
LIG1-219ENST00000600055 KRTAP4-4Q9BYR3 166 aa2.78□□□□□ -1.96
LIG1-219ENST00000600055 PHGR1C9JFL3 82 aa2.75□□□□□ -1.97
LIG1-219ENST00000600055 MUC19Q7Z5P9 8384 aa2.46□□□□□ -2.02
LIG1-219ENST00000600055 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
LIG1-219ENST00000600055 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 119.5 ms