RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LCE3BQ5TA77 95 aa7.04□□□□□ -1.28
SHKBP1-221ENST00000599833 A6NED7 52 aa6.98□□□□□ -1.29
SHKBP1-221ENST00000599833 MT1LQ93083 61 aa6.98□□□□□ -1.29
SHKBP1-221ENST00000599833 MT1GP13640 62 aa6.96□□□□□ -1.3
SHKBP1-221ENST00000599833 K7ERS5 55 aa6.93□□□□□ -1.3
SHKBP1-221ENST00000599833 KRTAP25-1Q3LHN0 102 aa6.92□□□□□ -1.3
SHKBP1-221ENST00000599833 MT1MQ8N339 61 aa6.9□□□□□ -1.3
SHKBP1-221ENST00000599833 KRTAP12-3P60328 96 aa6.85□□□□□ -1.31
SHKBP1-221ENST00000599833 PP632Q6XCG6 107 aa6.8□□□□□ -1.32
SHKBP1-221ENST00000599833 CDC42SE1Q9NRR8 79 aa6.78□□□□□ -1.32
SHKBP1-221ENST00000599833 KRTAP4-3Q9BYR4 195 aa6.75□□□□□ -1.33
SHKBP1-221ENST00000599833 KRTAP23-1A1A580 65 aa6.72□□□□□ -1.33
SHKBP1-221ENST00000599833 KRTAP4-7Q9BYR0 210 aa6.68□□□□□ -1.34
SHKBP1-221ENST00000599833 GPR98Q8WXG9 6306 aa6.64□□□□□ -1.35
SHKBP1-221ENST00000599833 ROMO1P60602 79 aa6.64□□□□□ -1.35
SHKBP1-221ENST00000599833 BRK1Q8WUW1 75 aa6.53□□□□□ -1.36
SHKBP1-221ENST00000599833 KRTAP4-9Q9BYQ8 210 aa6.5□□□□□ -1.37
SHKBP1-221ENST00000599833 KRTAP15-1Q3LI76 137 aa6.49□□□□□ -1.37
SHKBP1-221ENST00000599833 HMCN1Q96RW7 5635 aa6.48□□□□□ -1.37
SHKBP1-221ENST00000599833 KRTAP5-4Q6L8H1 288 aa6.47□□□□□ -1.37
SHKBP1-221ENST00000599833 PRO0628Q9UI54 55 aa6.47□□□□□ -1.37
SHKBP1-221ENST00000599833 KRTAP19-4Q3LI73 84 aa6.44□□□□□ -1.38
SHKBP1-221ENST00000599833 LCE4AQ5TA78 99 aa6.44□□□□□ -1.38
SHKBP1-221ENST00000599833 LCE1DQ5T752 114 aa6.41□□□□□ -1.38
SHKBP1-221ENST00000599833 KRTAP5-5Q701N2 237 aaPredicted RBP6.37□□□□□ -1.39
SHKBP1-221ENST00000599833 LCE3CQ5T5A8 94 aa6.35□□□□□ -1.39
SHKBP1-221ENST00000599833 LOC100996750A0A140TA64 210 aa6.31□□□□□ -1.4
SHKBP1-221ENST00000599833 MT4P47944 62 aa6.31□□□□□ -1.4
SHKBP1-221ENST00000599833 KRTAP4-6Q9BYQ5 205 aa6.24□□□□□ -1.41
SHKBP1-221ENST00000599833 SYNE1Q8NF91 8797 aaKnown RBP6.22□□□□□ -1.41
SHKBP1-221ENST00000599833 PMAIP1Q13794 54 aa6.19□□□□□ -1.42
SHKBP1-221ENST00000599833 AHNAK2Q8IVF2 5795 aa6.18□□□□□ -1.42
SHKBP1-221ENST00000599833 KRTAP9-6A8MVA2 160 aa6.1□□□□□ -1.43
SHKBP1-221ENST00000599833 SVIPQ8NHG7 77 aa6.07□□□□□ -1.44
SHKBP1-221ENST00000599833 KRTAP20-2Q3LI61 65 aa6.04□□□□□ -1.44
SHKBP1-221ENST00000599833 SPRR5A0A1B0GTR4 108 aa6.02□□□□□ -1.45
SHKBP1-221ENST00000599833 KTN1-AS1Q86SY8 53 aa5.99□□□□□ -1.45
SHKBP1-221ENST00000599833 KRTAP5-10Q6L8G5 202 aa5.97□□□□□ -1.45
SHKBP1-221ENST00000599833 KRTAP12-4P60329 112 aa5.95□□□□□ -1.46
SHKBP1-221ENST00000599833 MT1AP04731 61 aa5.93□□□□□ -1.46
SHKBP1-221ENST00000599833 KRTAP6-1Q3LI64 71 aa5.91□□□□□ -1.46
SHKBP1-221ENST00000599833 KRTAP5-3Q6L8H2 238 aa5.9□□□□□ -1.46
SHKBP1-221ENST00000599833 KRTAP5-7Q6L8G8 165 aa5.78□□□□□ -1.48
SHKBP1-221ENST00000599833 KRTAP5-2Q701N4 177 aa5.73□□□□□ -1.49
SHKBP1-221ENST00000599833 PRAC1Q96KF2 57 aa5.71□□□□□ -1.5
SHKBP1-221ENST00000599833 KRTAP9-4Q9BYQ2 154 aa5.7□□□□□ -1.5
SHKBP1-221ENST00000599833 KRTAP6-2Q3LI66 62 aa5.56□□□□□ -1.52
SHKBP1-221ENST00000599833 KRTAP4-11Q9BYQ6 195 aa5.43□□□□□ -1.54
SHKBP1-221ENST00000599833 OBSCNQ5VST9 7968 aa5.37□□□□□ -1.55
SHKBP1-221ENST00000599833 MT3P25713 68 aa5.36□□□□□ -1.55
SHKBP1-221ENST00000599833 KRTAP5-8O75690 187 aa5.3□□□□□ -1.56
SHKBP1-221ENST00000599833 AHNAKQ09666 5890 aaKnown RBP5.13□□□□□ -1.59
SHKBP1-221ENST00000599833 MUC5ACP98088 5654 aa5.09□□□□□ -1.59
SHKBP1-221ENST00000599833 MUC5BQ9HC84 5762 aaPredicted RBP5.09□□□□□ -1.6
SHKBP1-221ENST00000599833 KRTAP5-1Q6L8H4 278 aa5.08□□□□□ -1.6
SHKBP1-221ENST00000599833 LCE1EQ5T753 118 aa4.9□□□□□ -1.63
SHKBP1-221ENST00000599833 KRTAP9-9Q9BYP9 154 aa4.87□□□□□ -1.63
SHKBP1-221ENST00000599833 LUZP6Q538Z0 58 aa4.82□□□□□ -1.64
SHKBP1-221ENST00000599833 KRTAP4-2Q9BYR5 136 aa4.67□□□□□ -1.66
SHKBP1-221ENST00000599833 NDUFAF8A1L188 74 aa4.6□□□□□ -1.67
SHKBP1-221ENST00000599833 LCE3DQ9BYE3 92 aa4.59□□□□□ -1.67
SHKBP1-221ENST00000599833 LCE1CQ5T751 118 aa4.57□□□□□ -1.68
SHKBP1-221ENST00000599833 LCE1BQ5T7P3 118 aa4.57□□□□□ -1.68
SHKBP1-221ENST00000599833 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
SHKBP1-221ENST00000599833 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.23□□□□□ -1.73
SHKBP1-221ENST00000599833 A0A0A0MQY5 61 aa4.22□□□□□ -1.73
SHKBP1-221ENST00000599833 H3BS24 57 aa4.16□□□□□ -1.74
SHKBP1-221ENST00000599833 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
SHKBP1-221ENST00000599833 KRTAP4-12Q9BQ66 201 aa4.06□□□□□ -1.76
SHKBP1-221ENST00000599833 INE1O15225 51 aa3.95□□□□□ -1.78
SHKBP1-221ENST00000599833 KRTAP21-2Q3LI59 83 aa3.93□□□□□ -1.78
SHKBP1-221ENST00000599833 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
SHKBP1-221ENST00000599833 PHGR1C9JFL3 82 aa3.56□□□□□ -1.84
SHKBP1-221ENST00000599833 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
SHKBP1-221ENST00000599833 PRM1P04553 51 aa3.43□□□□□ -1.86
SHKBP1-221ENST00000599833 MUC19Q7Z5P9 8384 aa3.28□□□□□ -1.88
SHKBP1-221ENST00000599833 KRTAP21-1Q3LI58 79 aa2.64□□□□□ -1.99
SHKBP1-221ENST00000599833 MUC16Q8WXI7 14507 aa2.38□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 85.7 ms