RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 KRTAP19-5Q3LI72 72 aa4.9□□□□□ -1.63
TRIM28-211ENST00000597968 PSPHP1O15172 72 aa4.89□□□□□ -1.63
TRIM28-211ENST00000597968 LCE1DQ5T752 114 aa4.88□□□□□ -1.63
TRIM28-211ENST00000597968 CDC42SE1Q9NRR8 79 aa4.87□□□□□ -1.63
TRIM28-211ENST00000597968 A8MU10 97 aa4.86□□□□□ -1.63
TRIM28-211ENST00000597968 A0A1B0GU69 56 aa4.85□□□□□ -1.63
TRIM28-211ENST00000597968 MT1MQ8N339 61 aa4.85□□□□□ -1.63
TRIM28-211ENST00000597968 HMCN1Q96RW7 5635 aa4.84□□□□□ -1.64
TRIM28-211ENST00000597968 LINC01558Q9Y6Z2 57 aa4.83□□□□□ -1.64
TRIM28-211ENST00000597968 MT1LQ93083 61 aa4.82□□□□□ -1.64
TRIM28-211ENST00000597968 PRR15LQ9BU68 103 aa4.8□□□□□ -1.64
TRIM28-211ENST00000597968 A6NED7 52 aa4.77□□□□□ -1.65
TRIM28-211ENST00000597968 MT4P47944 62 aa4.77□□□□□ -1.65
TRIM28-211ENST00000597968 KRTAP5-4Q6L8H1 288 aa4.77□□□□□ -1.65
TRIM28-211ENST00000597968 TNP1P09430 55 aa4.76□□□□□ -1.65
TRIM28-211ENST00000597968 C10orf95Q9H7T3 257 aa4.76□□□□□ -1.65
TRIM28-211ENST00000597968 LCE3AQ5TA76 89 aa4.74□□□□□ -1.65
TRIM28-211ENST00000597968 KRTAP4-3Q9BYR4 195 aa4.69□□□□□ -1.66
TRIM28-211ENST00000597968 KRTAP5-10Q6L8G5 202 aa4.65□□□□□ -1.67
TRIM28-211ENST00000597968 AHNAK2Q8IVF2 5795 aa4.64□□□□□ -1.67
TRIM28-211ENST00000597968 KRTAP4-6Q9BYQ5 205 aa4.62□□□□□ -1.67
TRIM28-211ENST00000597968 KRTAP12-3P60328 96 aa4.58□□□□□ -1.68
TRIM28-211ENST00000597968 KRTAP4-7Q9BYR0 210 aa4.57□□□□□ -1.68
TRIM28-211ENST00000597968 KRTAP5-7Q6L8G8 165 aa4.52□□□□□ -1.69
TRIM28-211ENST00000597968 SPRR5A0A1B0GTR4 108 aa4.51□□□□□ -1.69
TRIM28-211ENST00000597968 H3BS24 57 aa4.51□□□□□ -1.69
TRIM28-211ENST00000597968 KRTAP5-3Q6L8H2 238 aa4.51□□□□□ -1.69
TRIM28-211ENST00000597968 UQCR11O14957 56 aa4.5□□□□□ -1.69
TRIM28-211ENST00000597968 KRTAP19-4Q3LI73 84 aa4.5□□□□□ -1.69
TRIM28-211ENST00000597968 KRTAP5-5Q701N2 237 aaPredicted RBP4.49□□□□□ -1.69
TRIM28-211ENST00000597968 PRAC1Q96KF2 57 aa4.49□□□□□ -1.69
TRIM28-211ENST00000597968 KRTAP20-2Q3LI61 65 aa4.48□□□□□ -1.69
TRIM28-211ENST00000597968 MIR22HGQ0VDD5 57 aa4.47□□□□□ -1.69
TRIM28-211ENST00000597968 KRTAP12-4P60329 112 aa4.45□□□□□ -1.7
TRIM28-211ENST00000597968 KRTAP25-1Q3LHN0 102 aa4.42□□□□□ -1.7
TRIM28-211ENST00000597968 LOC100996750A0A140TA64 210 aa4.33□□□□□ -1.72
TRIM28-211ENST00000597968 SYNE1Q8NF91 8797 aaKnown RBP4.32□□□□□ -1.72
TRIM28-211ENST00000597968 KRTAP23-1A1A580 65 aa4.32□□□□□ -1.72
TRIM28-211ENST00000597968 ROMO1P60602 79 aa4.32□□□□□ -1.72
TRIM28-211ENST00000597968 K7ERS5 55 aa4.31□□□□□ -1.72
TRIM28-211ENST00000597968 KRTAP15-1Q3LI76 137 aa4.23□□□□□ -1.73
TRIM28-211ENST00000597968 LCE3CQ5T5A8 94 aa4.2□□□□□ -1.74
TRIM28-211ENST00000597968 KRTAP5-2Q701N4 177 aa4.15□□□□□ -1.75
TRIM28-211ENST00000597968 KRTAP4-11Q9BYQ6 195 aa4.15□□□□□ -1.75
TRIM28-211ENST00000597968 MT1AP04731 61 aa4.12□□□□□ -1.75
TRIM28-211ENST00000597968 KRTAP6-1Q3LI64 71 aa4.06□□□□□ -1.76
TRIM28-211ENST00000597968 KRTAP9-4Q9BYQ2 154 aa4.01□□□□□ -1.77
TRIM28-211ENST00000597968 KRTAP5-8O75690 187 aa4□□□□□ -1.77
TRIM28-211ENST00000597968 KRTAP9-6A8MVA2 160 aa3.98□□□□□ -1.77
TRIM28-211ENST00000597968 NDUFAF8A1L188 74 aa3.92□□□□□ -1.78
TRIM28-211ENST00000597968 KRTAP6-2Q3LI66 62 aa3.92□□□□□ -1.78
TRIM28-211ENST00000597968 OBSCNQ5VST9 7968 aa3.9□□□□□ -1.79
TRIM28-211ENST00000597968 MUC5BQ9HC84 5762 aaPredicted RBP3.89□□□□□ -1.79
TRIM28-211ENST00000597968 MUC5ACP98088 5654 aa3.87□□□□□ -1.79
TRIM28-211ENST00000597968 A0A0A0MQY5 61 aa3.85□□□□□ -1.79
TRIM28-211ENST00000597968 KRTAP9-9Q9BYP9 154 aa3.85□□□□□ -1.79
TRIM28-211ENST00000597968 AHNAKQ09666 5890 aaKnown RBP3.82□□□□□ -1.8
TRIM28-211ENST00000597968 MT3P25713 68 aa3.81□□□□□ -1.8
TRIM28-211ENST00000597968 LUZP6Q538Z0 58 aa3.73□□□□□ -1.81
TRIM28-211ENST00000597968 KRTAP5-1Q6L8H4 278 aa3.73□□□□□ -1.81
TRIM28-211ENST00000597968 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
TRIM28-211ENST00000597968 INE1O15225 51 aa3.38□□□□□ -1.87
TRIM28-211ENST00000597968 KRTAP4-2Q9BYR5 136 aa3.32□□□□□ -1.88
TRIM28-211ENST00000597968 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
TRIM28-211ENST00000597968 LCE1BQ5T7P3 118 aa3.31□□□□□ -1.88
TRIM28-211ENST00000597968 LCE1FQ5T754 118 aa3.02□□□□□ -1.93
TRIM28-211ENST00000597968 KRTAP5-11Q6L8G4 156 aa3.01□□□□□ -1.93
TRIM28-211ENST00000597968 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.01□□□□□ -1.93
TRIM28-211ENST00000597968 LCE3DQ9BYE3 92 aa3.01□□□□□ -1.93
TRIM28-211ENST00000597968 KRTAP4-12Q9BQ66 201 aa3□□□□□ -1.93
TRIM28-211ENST00000597968 LCE3EQ5T5B0 92 aa2.8□□□□□ -1.96
TRIM28-211ENST00000597968 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
TRIM28-211ENST00000597968 KRTAP21-2Q3LI59 83 aa2.7□□□□□ -1.98
TRIM28-211ENST00000597968 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
TRIM28-211ENST00000597968 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.03
TRIM28-211ENST00000597968 PRM1P04553 51 aa2.15□□□□□ -2.07
TRIM28-211ENST00000597968 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
TRIM28-211ENST00000597968 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 13.5 ms