RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 CRCT1Q9UGL9 99 aa5.97□□□□□ -1.45
SHKBP1-205ENST00000594973 KRTAP4-7Q9BYR0 210 aa5.96□□□□□ -1.46
SHKBP1-205ENST00000594973 MT1LQ93083 61 aa5.95□□□□□ -1.46
SHKBP1-205ENST00000594973 MUC12Q9UKN1 5478 aa5.92□□□□□ -1.46
SHKBP1-205ENST00000594973 KRTAP9-6A8MVA2 160 aa5.88□□□□□ -1.47
SHKBP1-205ENST00000594973 MACF1Q9UPN3 7388 aaKnown RBP5.86□□□□□ -1.47
SHKBP1-205ENST00000594973 KRTAP19-4Q3LI73 84 aa5.78□□□□□ -1.48
SHKBP1-205ENST00000594973 SYNE2Q8WXH0 6885 aaKnown RBP5.77□□□□□ -1.49
SHKBP1-205ENST00000594973 KRTAP9-6A0A140TA67 174 aa5.73□□□□□ -1.49
SHKBP1-205ENST00000594973 SPRR2FQ96RM1 72 aa5.72□□□□□ -1.49
SHKBP1-205ENST00000594973 KRTAP19-3Q7Z4W3 81 aa5.7□□□□□ -1.5
SHKBP1-205ENST00000594973 KRTAP4-3Q9BYR4 195 aa5.69□□□□□ -1.5
SHKBP1-205ENST00000594973 MT1GP13640 62 aa5.64□□□□□ -1.51
SHKBP1-205ENST00000594973 MT1MQ8N339 61 aa5.64□□□□□ -1.51
SHKBP1-205ENST00000594973 MDN1Q9NU22 5596 aa5.6□□□□□ -1.51
SHKBP1-205ENST00000594973 DSTQ03001 7570 aaKnown RBP5.58□□□□□ -1.52
SHKBP1-205ENST00000594973 LOC100996750A0A140TA64 210 aa5.58□□□□□ -1.52
SHKBP1-205ENST00000594973 LCE5AQ5TCM9 118 aa5.55□□□□□ -1.52
SHKBP1-205ENST00000594973 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.53□□□□□ -1.52
SHKBP1-205ENST00000594973 KRTAP5-9P26371 169 aa5.41□□□□□ -1.54
SHKBP1-205ENST00000594973 KRTAP12-4P60329 112 aa5.37□□□□□ -1.55
SHKBP1-205ENST00000594973 LCE1AQ5T7P2 110 aa5.36□□□□□ -1.55
SHKBP1-205ENST00000594973 KRTAP6-3Q3LI67 103 aa5.34□□□□□ -1.56
SHKBP1-205ENST00000594973 SPRR2EP22531 72 aa5.31□□□□□ -1.56
SHKBP1-205ENST00000594973 SPRR2BP35325 72 aa5.31□□□□□ -1.56
SHKBP1-205ENST00000594973 SPRR2AP35326 72 aa5.31□□□□□ -1.56
SHKBP1-205ENST00000594973 KRTAP9-7A8MTY7 169 aa5.25□□□□□ -1.57
SHKBP1-205ENST00000594973 SPRR2DP22532 72 aa5.09□□□□□ -1.59
SHKBP1-205ENST00000594973 KRTAP6-1Q3LI64 71 aa5.06□□□□□ -1.6
SHKBP1-205ENST00000594973 LCE3BQ5TA77 95 aa5.05□□□□□ -1.6
SHKBP1-205ENST00000594973 KRTAP5-5Q701N2 237 aaPredicted RBP5.02□□□□□ -1.61
SHKBP1-205ENST00000594973 SYNE1Q8NF91 8797 aaKnown RBP5.02□□□□□ -1.61
SHKBP1-205ENST00000594973 NEBP20929 6669 aa5.01□□□□□ -1.61
SHKBP1-205ENST00000594973 MT1AP04731 61 aa5□□□□□ -1.61
SHKBP1-205ENST00000594973 KRTAP4-9Q9BYQ8 210 aa4.88□□□□□ -1.63
SHKBP1-205ENST00000594973 PRM1P04553 51 aa4.81□□□□□ -1.64
SHKBP1-205ENST00000594973 LCE3EQ5T5B0 92 aa4.8□□□□□ -1.64
SHKBP1-205ENST00000594973 LCE3DQ9BYE3 92 aa4.79□□□□□ -1.64
SHKBP1-205ENST00000594973 KRTAP9-4Q9BYQ2 154 aa4.74□□□□□ -1.65
SHKBP1-205ENST00000594973 KRTAP20-1Q3LI63 56 aa4.64□□□□□ -1.67
SHKBP1-205ENST00000594973 KRTAP6-2Q3LI66 62 aa4.61□□□□□ -1.67
SHKBP1-205ENST00000594973 KRTAP5-4Q6L8H1 288 aa4.59□□□□□ -1.67
SHKBP1-205ENST00000594973 KRTAP2-2Q9BYT5 123 aa4.58□□□□□ -1.68
SHKBP1-205ENST00000594973 OBSCNQ5VST9 7968 aa4.55□□□□□ -1.68
SHKBP1-205ENST00000594973 MT3P25713 68 aa4.52□□□□□ -1.69
SHKBP1-205ENST00000594973 MT4P47944 62 aa4.5□□□□□ -1.69
SHKBP1-205ENST00000594973 KRTAP4-6Q9BYQ5 205 aa4.48□□□□□ -1.69
SHKBP1-205ENST00000594973 LCE4AQ5TA78 99 aa4.41□□□□□ -1.7
SHKBP1-205ENST00000594973 HMCN1Q96RW7 5635 aa4.4□□□□□ -1.71
SHKBP1-205ENST00000594973 KRTAP20-2Q3LI61 65 aa4.34□□□□□ -1.72
SHKBP1-205ENST00000594973 LCE1DQ5T752 114 aa4.33□□□□□ -1.72
SHKBP1-205ENST00000594973 KRTAP5-2Q701N4 177 aa4.22□□□□□ -1.73
SHKBP1-205ENST00000594973 KRTAP5-3Q6L8H2 238 aa4.13□□□□□ -1.75
SHKBP1-205ENST00000594973 LCE1EQ5T753 118 aa4.02□□□□□ -1.77
SHKBP1-205ENST00000594973 GPR98Q8WXG9 6306 aa4.01□□□□□ -1.77
SHKBP1-205ENST00000594973 MUC5ACP98088 5654 aa3.81□□□□□ -1.8
SHKBP1-205ENST00000594973 AHNAK2Q8IVF2 5795 aa3.77□□□□□ -1.81
SHKBP1-205ENST00000594973 LCE1BQ5T7P3 118 aa3.74□□□□□ -1.81
SHKBP1-205ENST00000594973 KRTAP4-11Q9BYQ6 195 aa3.7□□□□□ -1.82
SHKBP1-205ENST00000594973 LCE1FQ5T754 118 aa3.66□□□□□ -1.82
SHKBP1-205ENST00000594973 KRTAP5-1Q6L8H4 278 aa3.65□□□□□ -1.83
SHKBP1-205ENST00000594973 KRTAP9-9Q9BYP9 154 aa3.61□□□□□ -1.83
SHKBP1-205ENST00000594973 KRTAP5-10Q6L8G5 202 aa3.6□□□□□ -1.83
SHKBP1-205ENST00000594973 KRTAP4-2Q9BYR5 136 aa3.59□□□□□ -1.83
SHKBP1-205ENST00000594973 LCE1CQ5T751 118 aa3.56□□□□□ -1.84
SHKBP1-205ENST00000594973 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
SHKBP1-205ENST00000594973 KRTAP5-7Q6L8G8 165 aa3.42□□□□□ -1.86
SHKBP1-205ENST00000594973 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.32□□□□□ -1.88
SHKBP1-205ENST00000594973 KRTAP21-2Q3LI59 83 aa3.27□□□□□ -1.89
SHKBP1-205ENST00000594973 MUC5BQ9HC84 5762 aaPredicted RBP3.25□□□□□ -1.89
SHKBP1-205ENST00000594973 KRTAP21-1Q3LI58 79 aa3.15□□□□□ -1.9
SHKBP1-205ENST00000594973 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.91
SHKBP1-205ENST00000594973 AHNAKQ09666 5890 aaKnown RBP3.09□□□□□ -1.92
SHKBP1-205ENST00000594973 KRTAP4-12Q9BQ66 201 aa3.02□□□□□ -1.93
SHKBP1-205ENST00000594973 KRTAP4-4Q9BYR3 166 aa3.02□□□□□ -1.93
SHKBP1-205ENST00000594973 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
SHKBP1-205ENST00000594973 PHGR1C9JFL3 82 aa2.68□□□□□ -1.98
SHKBP1-205ENST00000594973 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 60.5 ms