RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CRCT1Q9UGL9 99 aa6.79□□□□□ -1.32
CLIP3-206ENST00000593074 KRTAP19-3Q7Z4W3 81 aa6.64□□□□□ -1.35
CLIP3-206ENST00000593074 MACF1Q9UPN3 7388 aaKnown RBP6.63□□□□□ -1.35
CLIP3-206ENST00000593074 SPRR2FQ96RM1 72 aa6.62□□□□□ -1.35
CLIP3-206ENST00000593074 MT1GP13640 62 aa6.61□□□□□ -1.35
CLIP3-206ENST00000593074 MT1MQ8N339 61 aa6.55□□□□□ -1.36
CLIP3-206ENST00000593074 MUC12Q9UKN1 5478 aa6.54□□□□□ -1.36
CLIP3-206ENST00000593074 KRTAP4-3Q9BYR4 195 aa6.49□□□□□ -1.37
CLIP3-206ENST00000593074 KRTAP2-3P0C7H8 128 aa6.48□□□□□ -1.37
CLIP3-206ENST00000593074 KRTAP2-4Q9BYR9 128 aa6.48□□□□□ -1.37
CLIP3-206ENST00000593074 KRTAP2-1Q9BYU5 128 aa6.48□□□□□ -1.37
CLIP3-206ENST00000593074 LCE5AQ5TCM9 118 aa6.48□□□□□ -1.37
CLIP3-206ENST00000593074 INE1O15225 51 aa6.42□□□□□ -1.38
CLIP3-206ENST00000593074 SYNE2Q8WXH0 6885 aaKnown RBP6.4□□□□□ -1.39
CLIP3-206ENST00000593074 KRTAP5-9P26371 169 aa6.4□□□□□ -1.39
CLIP3-206ENST00000593074 LOC100996750A0A140TA64 210 aa6.38□□□□□ -1.39
CLIP3-206ENST00000593074 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.32□□□□□ -1.4
CLIP3-206ENST00000593074 LCE1AQ5T7P2 110 aa6.27□□□□□ -1.41
CLIP3-206ENST00000593074 KRTAP9-7A8MTY7 169 aa6.23□□□□□ -1.41
CLIP3-206ENST00000593074 SPRR2EP22531 72 aa6.19□□□□□ -1.42
CLIP3-206ENST00000593074 SPRR2BP35325 72 aa6.19□□□□□ -1.42
CLIP3-206ENST00000593074 SPRR2AP35326 72 aa6.19□□□□□ -1.42
CLIP3-206ENST00000593074 KRTAP6-3Q3LI67 103 aa6.14□□□□□ -1.43
CLIP3-206ENST00000593074 DSTQ03001 7570 aaKnown RBP6.12□□□□□ -1.43
CLIP3-206ENST00000593074 MDN1Q9NU22 5596 aa6.12□□□□□ -1.43
CLIP3-206ENST00000593074 SPRR2DP22532 72 aa5.95□□□□□ -1.46
CLIP3-206ENST00000593074 KRTAP5-5Q701N2 237 aaPredicted RBP5.87□□□□□ -1.47
CLIP3-206ENST00000593074 MT1AP04731 61 aa5.86□□□□□ -1.47
CLIP3-206ENST00000593074 KRTAP6-1Q3LI64 71 aa5.84□□□□□ -1.47
CLIP3-206ENST00000593074 LCE3BQ5TA77 95 aa5.8□□□□□ -1.48
CLIP3-206ENST00000593074 NEBP20929 6669 aa5.71□□□□□ -1.5
CLIP3-206ENST00000593074 KRTAP12-4P60329 112 aa5.59□□□□□ -1.52
CLIP3-206ENST00000593074 KRTAP4-9Q9BYQ8 210 aa5.58□□□□□ -1.52
CLIP3-206ENST00000593074 SYNE1Q8NF91 8797 aaKnown RBP5.56□□□□□ -1.52
CLIP3-206ENST00000593074 KRTAP9-4Q9BYQ2 154 aa5.54□□□□□ -1.52
CLIP3-206ENST00000593074 KRTAP20-1Q3LI63 56 aa5.46□□□□□ -1.53
CLIP3-206ENST00000593074 KRTAP5-4Q6L8H1 288 aa5.42□□□□□ -1.54
CLIP3-206ENST00000593074 LCE3DQ9BYE3 92 aa5.41□□□□□ -1.54
CLIP3-206ENST00000593074 LCE3EQ5T5B0 92 aa5.32□□□□□ -1.56
CLIP3-206ENST00000593074 KRTAP6-2Q3LI66 62 aa5.31□□□□□ -1.56
CLIP3-206ENST00000593074 MT3P25713 68 aa5.29□□□□□ -1.56
CLIP3-206ENST00000593074 LCE4AQ5TA78 99 aa5.25□□□□□ -1.57
CLIP3-206ENST00000593074 KRTAP2-2Q9BYT5 123 aa5.22□□□□□ -1.57
CLIP3-206ENST00000593074 MT4P47944 62 aa5.19□□□□□ -1.58
CLIP3-206ENST00000593074 KRTAP4-6Q9BYQ5 205 aa5.18□□□□□ -1.58
CLIP3-206ENST00000593074 KRTAP20-2Q3LI61 65 aa5.08□□□□□ -1.6
CLIP3-206ENST00000593074 LCE1DQ5T752 114 aa5.01□□□□□ -1.61
CLIP3-206ENST00000593074 KRTAP5-2Q701N4 177 aa4.97□□□□□ -1.61
CLIP3-206ENST00000593074 HMCN1Q96RW7 5635 aa4.91□□□□□ -1.62
CLIP3-206ENST00000593074 PRM1P04553 51 aa4.89□□□□□ -1.63
CLIP3-206ENST00000593074 OBSCNQ5VST9 7968 aa4.88□□□□□ -1.63
CLIP3-206ENST00000593074 KRTAP5-3Q6L8H2 238 aa4.87□□□□□ -1.63
CLIP3-206ENST00000593074 GPR98Q8WXG9 6306 aa4.58□□□□□ -1.68
CLIP3-206ENST00000593074 LCE1EQ5T753 118 aa4.49□□□□□ -1.69
CLIP3-206ENST00000593074 AHNAK2Q8IVF2 5795 aa4.4□□□□□ -1.71
CLIP3-206ENST00000593074 MUC5ACP98088 5654 aa4.33□□□□□ -1.72
CLIP3-206ENST00000593074 KRTAP4-11Q9BYQ6 195 aa4.33□□□□□ -1.72
CLIP3-206ENST00000593074 LCE1BQ5T7P3 118 aa4.28□□□□□ -1.72
CLIP3-206ENST00000593074 KRTAP5-10Q6L8G5 202 aa4.28□□□□□ -1.72
CLIP3-206ENST00000593074 KRTAP5-1Q6L8H4 278 aa4.26□□□□□ -1.73
CLIP3-206ENST00000593074 LCE1CQ5T751 118 aa4.2□□□□□ -1.74
CLIP3-206ENST00000593074 KRTAP4-2Q9BYR5 136 aa4.18□□□□□ -1.74
CLIP3-206ENST00000593074 KRTAP5-8O75690 187 aa4.15□□□□□ -1.75
CLIP3-206ENST00000593074 KRTAP5-7Q6L8G8 165 aa4.11□□□□□ -1.75
CLIP3-206ENST00000593074 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.96□□□□□ -1.77
CLIP3-206ENST00000593074 KRTAP21-2Q3LI59 83 aa3.82□□□□□ -1.8
CLIP3-206ENST00000593074 KRTAP9-9Q9BYP9 154 aa3.67□□□□□ -1.82
CLIP3-206ENST00000593074 KRTAP5-11Q6L8G4 156 aa3.66□□□□□ -1.82
CLIP3-206ENST00000593074 MUC5BQ9HC84 5762 aaPredicted RBP3.62□□□□□ -1.83
CLIP3-206ENST00000593074 AHNAKQ09666 5890 aaKnown RBP3.6□□□□□ -1.83
CLIP3-206ENST00000593074 KRTAP4-12Q9BQ66 201 aa3.44□□□□□ -1.86
CLIP3-206ENST00000593074 KRTAP4-4Q9BYR3 166 aa3.39□□□□□ -1.87
CLIP3-206ENST00000593074 LCE1FQ5T754 118 aa3.2□□□□□ -1.9
CLIP3-206ENST00000593074 PHGR1C9JFL3 82 aa3.15□□□□□ -1.91
CLIP3-206ENST00000593074 KRTAP21-1Q3LI58 79 aa3.08□□□□□ -1.92
CLIP3-206ENST00000593074 MUC19Q7Z5P9 8384 aa2.91□□□□□ -1.94
CLIP3-206ENST00000593074 MUC16Q8WXI7 14507 aa2.05□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 103.4 ms