RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 SSPOA2VEC9 5147 aa4.93□□□□□ -1.62
SMARCA4-219ENST00000592604 KRTAP19-6Q3LI70 58 aa4.84□□□□□ -1.63
SMARCA4-219ENST00000592604 KRTAP9-6A0A140TA67 174 aa4.79□□□□□ -1.64
SMARCA4-219ENST00000592604 LOC100996750A0A140TA64 210 aa4.78□□□□□ -1.64
SMARCA4-219ENST00000592604 KRTAP4-3Q9BYR4 195 aa4.76□□□□□ -1.65
SMARCA4-219ENST00000592604 LCE2DQ5TA82 110 aaPredicted RBP4.74□□□□□ -1.65
SMARCA4-219ENST00000592604 CRCT1Q9UGL9 99 aa4.74□□□□□ -1.65
SMARCA4-219ENST00000592604 MT1GP13640 62 aa4.73□□□□□ -1.65
SMARCA4-219ENST00000592604 MT1MQ8N339 61 aa4.72□□□□□ -1.65
SMARCA4-219ENST00000592604 KRTAP19-3Q7Z4W3 81 aa4.7□□□□□ -1.66
SMARCA4-219ENST00000592604 KRTAP2-2Q9BYT5 123 aa4.62□□□□□ -1.67
SMARCA4-219ENST00000592604 FCGBPQ9Y6R7 5405 aaPredicted RBP4.62□□□□□ -1.67
SMARCA4-219ENST00000592604 KRTAP12-4P60329 112 aa4.59□□□□□ -1.67
SMARCA4-219ENST00000592604 MUC12Q9UKN1 5478 aa4.58□□□□□ -1.68
SMARCA4-219ENST00000592604 SYNE2Q8WXH0 6885 aaKnown RBP4.53□□□□□ -1.68
SMARCA4-219ENST00000592604 LCE5AQ5TCM9 118 aa4.53□□□□□ -1.68
SMARCA4-219ENST00000592604 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
SMARCA4-219ENST00000592604 MACF1Q9UPN3 7388 aaKnown RBP4.5□□□□□ -1.69
SMARCA4-219ENST00000592604 KRTAP6-3Q3LI67 103 aa4.49□□□□□ -1.69
SMARCA4-219ENST00000592604 SPRR2FQ96RM1 72 aa4.41□□□□□ -1.7
SMARCA4-219ENST00000592604 MT1AP04731 61 aa4.4□□□□□ -1.71
SMARCA4-219ENST00000592604 LCE3BQ5TA77 95 aa4.4□□□□□ -1.71
SMARCA4-219ENST00000592604 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.39□□□□□ -1.71
SMARCA4-219ENST00000592604 LCE1EQ5T753 118 aa4.37□□□□□ -1.71
SMARCA4-219ENST00000592604 DSTQ03001 7570 aaKnown RBP4.36□□□□□ -1.71
SMARCA4-219ENST00000592604 KRTAP9-7A8MTY7 169 aa4.35□□□□□ -1.71
SMARCA4-219ENST00000592604 KRTAP4-9Q9BYQ8 210 aa4.33□□□□□ -1.72
SMARCA4-219ENST00000592604 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
SMARCA4-219ENST00000592604 SYNE1Q8NF91 8797 aaKnown RBP4.28□□□□□ -1.72
SMARCA4-219ENST00000592604 LCE3DQ9BYE3 92 aa4.24□□□□□ -1.73
SMARCA4-219ENST00000592604 LCE3EQ5T5B0 92 aa4.21□□□□□ -1.74
SMARCA4-219ENST00000592604 KRTAP5-5Q701N2 237 aaPredicted RBP4.18□□□□□ -1.74
SMARCA4-219ENST00000592604 LCE1DQ5T752 114 aa4.18□□□□□ -1.74
SMARCA4-219ENST00000592604 PRM1P04553 51 aa4.15□□□□□ -1.74
SMARCA4-219ENST00000592604 MDN1Q9NU22 5596 aa4.13□□□□□ -1.75
SMARCA4-219ENST00000592604 KRTAP5-9P26371 169 aa4.08□□□□□ -1.76
SMARCA4-219ENST00000592604 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
SMARCA4-219ENST00000592604 LCE1FQ5T754 118 aa3.98□□□□□ -1.77
SMARCA4-219ENST00000592604 SPRR2EP22531 72 aa3.95□□□□□ -1.78
SMARCA4-219ENST00000592604 SPRR2BP35325 72 aa3.95□□□□□ -1.78
SMARCA4-219ENST00000592604 SPRR2AP35326 72 aa3.95□□□□□ -1.78
SMARCA4-219ENST00000592604 NEBP20929 6669 aa3.95□□□□□ -1.78
SMARCA4-219ENST00000592604 KRTAP6-2Q3LI66 62 aa3.92□□□□□ -1.78
SMARCA4-219ENST00000592604 OBSCNQ5VST9 7968 aa3.84□□□□□ -1.79
SMARCA4-219ENST00000592604 MT3P25713 68 aa3.84□□□□□ -1.8
SMARCA4-219ENST00000592604 SPRR2DP22532 72 aa3.78□□□□□ -1.8
SMARCA4-219ENST00000592604 KRTAP20-1Q3LI63 56 aa3.77□□□□□ -1.81
SMARCA4-219ENST00000592604 KRTAP5-4Q6L8H1 288 aa3.59□□□□□ -1.83
SMARCA4-219ENST00000592604 KRTAP4-6Q9BYQ5 205 aa3.4□□□□□ -1.86
SMARCA4-219ENST00000592604 KRTAP5-2Q701N4 177 aa3.4□□□□□ -1.87
SMARCA4-219ENST00000592604 MT4P47944 62 aa3.34□□□□□ -1.87
SMARCA4-219ENST00000592604 KRTAP20-2Q3LI61 65 aa3.34□□□□□ -1.87
SMARCA4-219ENST00000592604 LCE4AQ5TA78 99 aa3.3□□□□□ -1.88
SMARCA4-219ENST00000592604 HMCN1Q96RW7 5635 aa3.29□□□□□ -1.88
SMARCA4-219ENST00000592604 MUC19Q7Z5P9 8384 aa3.23□□□□□ -1.89
SMARCA4-219ENST00000592604 MUC5ACP98088 5654 aa3.23□□□□□ -1.89
SMARCA4-219ENST00000592604 KRTAP5-3Q6L8H2 238 aa3.2□□□□□ -1.9
SMARCA4-219ENST00000592604 GPR98Q8WXG9 6306 aa3.19□□□□□ -1.9
SMARCA4-219ENST00000592604 KRTAP5-10Q6L8G5 202 aa3.1□□□□□ -1.91
SMARCA4-219ENST00000592604 KRTAP4-11Q9BYQ6 195 aa3.08□□□□□ -1.92
SMARCA4-219ENST00000592604 KRTAP5-1Q6L8H4 278 aa3.06□□□□□ -1.92
SMARCA4-219ENST00000592604 AHNAK2Q8IVF2 5795 aa3.02□□□□□ -1.93
SMARCA4-219ENST00000592604 LCE1BQ5T7P3 118 aa3.02□□□□□ -1.93
SMARCA4-219ENST00000592604 KRTAP9-9Q9BYP9 154 aa2.97□□□□□ -1.93
SMARCA4-219ENST00000592604 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
SMARCA4-219ENST00000592604 KRTAP4-2Q9BYR5 136 aa2.94□□□□□ -1.94
SMARCA4-219ENST00000592604 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.82□□□□□ -1.96
SMARCA4-219ENST00000592604 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
SMARCA4-219ENST00000592604 KRTAP5-7Q6L8G8 165 aa2.72□□□□□ -1.97
SMARCA4-219ENST00000592604 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
SMARCA4-219ENST00000592604 KRTAP5-8O75690 187 aa2.63□□□□□ -1.99
SMARCA4-219ENST00000592604 MUC5BQ9HC84 5762 aaPredicted RBP2.58□□□□□ -2
SMARCA4-219ENST00000592604 KRTAP5-11Q6L8G4 156 aa2.51□□□□□ -2.01
SMARCA4-219ENST00000592604 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
SMARCA4-219ENST00000592604 AHNAKQ09666 5890 aaKnown RBP2.41□□□□□ -2.02
SMARCA4-219ENST00000592604 KRTAP4-12Q9BQ66 201 aa2.28□□□□□ -2.05
SMARCA4-219ENST00000592604 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
SMARCA4-219ENST00000592604 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 79.1 ms