RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	NDUFAF8	A1L188	74 aa		3.53	□□□□□ -1.84
DNMT1-223	ENST00000591239		A8MU10	97 aa		3.52	□□□□□ -1.85
DNMT1-223	ENST00000591239	MT3	P25713	68 aa		3.52	□□□□□ -1.85
DNMT1-223	ENST00000591239	PRR15L	Q9BU68	103 aa		3.52	□□□□□ -1.85
DNMT1-223	ENST00000591239	LINC01558	Q9Y6Z2	57 aa		3.51	□□□□□ -1.85
DNMT1-223	ENST00000591239	SPRR2D	P22532	72 aa		3.5	□□□□□ -1.85
DNMT1-223	ENST00000591239	RPS28	P62857	69 aa	Known RBP	3.49	□□□□□ -1.85
DNMT1-223	ENST00000591239	KRTAP19-7	Q3SYF9	63 aa		3.45	□□□□□ -1.86
DNMT1-223	ENST00000591239	KRTAP2-2	Q9BYT5	123 aa		3.43	□□□□□ -1.86
DNMT1-223	ENST00000591239	KRTAP2-1	Q9BYU5	128 aa		3.43	□□□□□ -1.86
DNMT1-223	ENST00000591239	UQCR11	O14957	56 aa		3.42	□□□□□ -1.86
DNMT1-223	ENST00000591239	MT1E	P04732	61 aa		3.42	□□□□□ -1.86
DNMT1-223	ENST00000591239		Q1T7F1	81 aa		3.42	□□□□□ -1.86
DNMT1-223	ENST00000591239		V9GYY9	64 aa		3.41	□□□□□ -1.86
DNMT1-223	ENST00000591239	C10orf95	Q9H7T3	257 aa		3.4	□□□□□ -1.87
DNMT1-223	ENST00000591239	TNP1	P09430	55 aa		3.38	□□□□□ -1.87
DNMT1-223	ENST00000591239	KRTAP19-5	Q3LI72	72 aa		3.38	□□□□□ -1.87
DNMT1-223	ENST00000591239	KRTAP19-3	Q7Z4W3	81 aa		3.37	□□□□□ -1.87
DNMT1-223	ENST00000591239	PSPHP1	O15172	72 aa		3.35	□□□□□ -1.87
DNMT1-223	ENST00000591239	MIR22HG	Q0VDD5	57 aa		3.34	□□□□□ -1.87
DNMT1-223	ENST00000591239	LCE3A	Q5TA76	89 aa		3.34	□□□□□ -1.87
DNMT1-223	ENST00000591239	DST	Q03001	7570 aa	Known RBP	3.32	□□□□□ -1.88
DNMT1-223	ENST00000591239	MT1G	P13640	62 aa		3.3	□□□□□ -1.88
DNMT1-223	ENST00000591239	MT1L	Q93083	61 aa		3.28	□□□□□ -1.88
DNMT1-223	ENST00000591239	PP632	Q6XCG6	107 aa		3.27	□□□□□ -1.89
DNMT1-223	ENST00000591239		A6NED7	52 aa		3.26	□□□□□ -1.89
DNMT1-223	ENST00000591239		K7ERS5	55 aa		3.26	□□□□□ -1.89
DNMT1-223	ENST00000591239	MT1M	Q8N339	61 aa		3.24	□□□□□ -1.89
DNMT1-223	ENST00000591239	KRTAP25-1	Q3LHN0	102 aa		3.22	□□□□□ -1.89
DNMT1-223	ENST00000591239	KRTAP12-3	P60328	96 aa		3.21	□□□□□ -1.9
DNMT1-223	ENST00000591239	CDC42SE1	Q9NRR8	79 aa		3.19	□□□□□ -1.9
DNMT1-223	ENST00000591239	KRTAP4-3	Q9BYR4	195 aa		3.17	□□□□□ -1.9
DNMT1-223	ENST00000591239	KRTAP5-3	Q6L8H2	238 aa		3.16	□□□□□ -1.9
DNMT1-223	ENST00000591239	BRK1	Q8WUW1	75 aa		3.12	□□□□□ -1.91
DNMT1-223	ENST00000591239	SPRR5	A0A1B0GTR4	108 aa		3.09	□□□□□ -1.91
DNMT1-223	ENST00000591239	LCE1F	Q5T754	118 aa		3.09	□□□□□ -1.91
DNMT1-223	ENST00000591239	MT4	P47944	62 aa		3.06	□□□□□ -1.92
DNMT1-223	ENST00000591239	ROMO1	P60602	79 aa		3.06	□□□□□ -1.92
DNMT1-223	ENST00000591239	KRTAP5-4	Q6L8H1	288 aa		3.05	□□□□□ -1.92
DNMT1-223	ENST00000591239	HMCN1	Q96RW7	5635 aa		3.03	□□□□□ -1.92
DNMT1-223	ENST00000591239	AHNAK2	Q8IVF2	5795 aa		3	□□□□□ -1.93
DNMT1-223	ENST00000591239	PRO0628	Q9UI54	55 aa		2.98	□□□□□ -1.93
DNMT1-223	ENST00000591239	LCE3C	Q5T5A8	94 aa		2.97	□□□□□ -1.93
DNMT1-223	ENST00000591239	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.97	□□□□□ -1.93
DNMT1-223	ENST00000591239	KRTAP5-10	Q6L8G5	202 aa		2.94	□□□□□ -1.94
DNMT1-223	ENST00000591239	KRTAP5-7	Q6L8G8	165 aa		2.94	□□□□□ -1.94
DNMT1-223	ENST00000591239	PMAIP1	Q13794	54 aa		2.93	□□□□□ -1.94
DNMT1-223	ENST00000591239	KRTAP12-4	P60329	112 aa		2.88	□□□□□ -1.95
DNMT1-223	ENST00000591239	KRTAP20-2	Q3LI61	65 aa		2.88	□□□□□ -1.95
DNMT1-223	ENST00000591239	LCE1E	Q5T753	118 aa		2.82	□□□□□ -1.96
DNMT1-223	ENST00000591239	KRTAP9-6	A8MVA2	160 aa		2.8	□□□□□ -1.96
DNMT1-223	ENST00000591239	SYNE1	Q8NF91	8797 aa	Known RBP	2.8	□□□□□ -1.96
DNMT1-223	ENST00000591239	KTN1-AS1	Q86SY8	53 aa		2.79	□□□□□ -1.96
DNMT1-223	ENST00000591239	MT1A	P04731	61 aa		2.78	□□□□□ -1.96
DNMT1-223	ENST00000591239	KRTAP6-1	Q3LI64	71 aa		2.77	□□□□□ -1.97
DNMT1-223	ENST00000591239	AHNAK	Q09666	5890 aa	Known RBP	2.71	□□□□□ -1.98
DNMT1-223	ENST00000591239	KRTAP5-2	Q701N4	177 aa		2.69	□□□□□ -1.98
DNMT1-223	ENST00000591239	KRTAP6-2	Q3LI66	62 aa		2.64	□□□□□ -1.99
DNMT1-223	ENST00000591239	LCE3E	Q5T5B0	92 aa		2.62	□□□□□ -1.99
DNMT1-223	ENST00000591239	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.57	□□□□□ -2
DNMT1-223	ENST00000591239	KRTAP5-11	Q6L8G4	156 aa		2.56	□□□□□ -2
DNMT1-223	ENST00000591239	MUC5AC	P98088	5654 aa		2.55	□□□□□ -2
DNMT1-223	ENST00000591239	KRTAP5-8	O75690	187 aa		2.52	□□□□□ -2.01
DNMT1-223	ENST00000591239	LUZP6	Q538Z0	58 aa		2.52	□□□□□ -2.01
DNMT1-223	ENST00000591239	OBSCN	Q5VST9	7968 aa		2.51	□□□□□ -2.01
DNMT1-223	ENST00000591239	KRTAP5-1	Q6L8H4	278 aa		2.4	□□□□□ -2.03
DNMT1-223	ENST00000591239	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.35	□□□□□ -2.03
DNMT1-223	ENST00000591239	LCE3D	Q9BYE3	92 aa		2.23	□□□□□ -2.05
DNMT1-223	ENST00000591239	LCE1B	Q5T7P3	118 aa		2.18	□□□□□ -2.06
DNMT1-223	ENST00000591239	LCE1C	Q5T751	118 aa		2.16	□□□□□ -2.06
DNMT1-223	ENST00000591239	KRTAP4-4	Q9BYR3	166 aa		1.93	□□□□□ -2.1
DNMT1-223	ENST00000591239	KRTAP21-2	Q3LI59	83 aa		1.83	□□□□□ -2.12
DNMT1-223	ENST00000591239	PHGR1	C9JFL3	82 aa		1.8	□□□□□ -2.12
DNMT1-223	ENST00000591239	INE1	O15225	51 aa		1.76	□□□□□ -2.13
DNMT1-223	ENST00000591239	PRM1	P04553	51 aa		1.56	□□□□□ -2.16
DNMT1-223	ENST00000591239	MUC19	Q7Z5P9	8384 aa		1.52	□□□□□ -2.17
DNMT1-223	ENST00000591239	KRTAP21-1	Q3LI58	79 aa		1.36	□□□□□ -2.19
DNMT1-223	ENST00000591239	MUC16	Q8WXI7	14507 aa		1.11	□□□□□ -2.23

Retrieved 78 of 20,778 RNA–protein pairs in 43.3 ms