RNA–Protein interactions for RNA: ENST00000590215.1

MBD1-223, Transcript of methyl-CpG binding domain protein 1, human

TSL 5

Gene MBD1, Length 749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-223	ENST00000590215	CDC42SE1	Q9NRR8	79 aa		6.79	□□□□□ -1.32
MBD1-223	ENST00000590215	MT1G	P13640	62 aa		6.72	□□□□□ -1.33
MBD1-223	ENST00000590215	KRTAP2-2	Q9BYT5	123 aa		6.72	□□□□□ -1.33
MBD1-223	ENST00000590215	KRTAP2-1	Q9BYU5	128 aa		6.72	□□□□□ -1.33
MBD1-223	ENST00000590215	MT1L	Q93083	61 aa		6.71	□□□□□ -1.34
MBD1-223	ENST00000590215	LCE3B	Q5TA77	95 aa		6.7	□□□□□ -1.34
MBD1-223	ENST00000590215	KRTAP12-3	P60328	96 aa		6.66	□□□□□ -1.34
MBD1-223	ENST00000590215	KRTAP23-1	A1A580	65 aa		6.65	□□□□□ -1.34
MBD1-223	ENST00000590215	PP632	Q6XCG6	107 aa		6.63	□□□□□ -1.35
MBD1-223	ENST00000590215	ROMO1	P60602	79 aa		6.61	□□□□□ -1.35
MBD1-223	ENST00000590215	MT1M	Q8N339	61 aa		6.6	□□□□□ -1.35
MBD1-223	ENST00000590215	GPR98	Q8WXG9	6306 aa		6.49	□□□□□ -1.37
MBD1-223	ENST00000590215	DST	Q03001	7570 aa	Known RBP	6.47	□□□□□ -1.37
MBD1-223	ENST00000590215	KRTAP4-3	Q9BYR4	195 aa		6.39	□□□□□ -1.39
MBD1-223	ENST00000590215	KRTAP19-4	Q3LI73	84 aa		6.38	□□□□□ -1.39
MBD1-223	ENST00000590215	KRTAP4-7	Q9BYR0	210 aa		6.36	□□□□□ -1.39
MBD1-223	ENST00000590215	KRTAP15-1	Q3LI76	137 aa		6.34	□□□□□ -1.39
MBD1-223	ENST00000590215	BRK1	Q8WUW1	75 aa		6.34	□□□□□ -1.39
MBD1-223	ENST00000590215	LCE3C	Q5T5A8	94 aa		6.18	□□□□□ -1.42
MBD1-223	ENST00000590215	LCE4A	Q5TA78	99 aa		6.16	□□□□□ -1.42
MBD1-223	ENST00000590215	KRTAP5-4	Q6L8H1	288 aa		6.14	□□□□□ -1.43
MBD1-223	ENST00000590215	KRTAP4-9	Q9BYQ8	210 aa		6.12	□□□□□ -1.43
MBD1-223	ENST00000590215	LCE1D	Q5T752	114 aa		6.06	□□□□□ -1.44
MBD1-223	ENST00000590215	KRTAP5-5	Q701N2	237 aa	Predicted RBP	6.06	□□□□□ -1.44
MBD1-223	ENST00000590215	LOC100996750	A0A140TA64	210 aa		6.01	□□□□□ -1.45
MBD1-223	ENST00000590215	PMAIP1	Q13794	54 aa		6	□□□□□ -1.45
MBD1-223	ENST00000590215	MT4	P47944	62 aa		5.99	□□□□□ -1.45
MBD1-223	ENST00000590215	HMCN1	Q96RW7	5635 aa		5.97	□□□□□ -1.45
MBD1-223	ENST00000590215	KRTAP4-6	Q9BYQ5	205 aa		5.9	□□□□□ -1.46
MBD1-223	ENST00000590215	KRTAP9-6	A8MVA2	160 aa		5.83	□□□□□ -1.48
MBD1-223	ENST00000590215	PRO0628	Q9UI54	55 aa		5.83	□□□□□ -1.48
MBD1-223	ENST00000590215	SPRR5	A0A1B0GTR4	108 aa		5.77	□□□□□ -1.49
MBD1-223	ENST00000590215	KRTAP12-4	P60329	112 aa		5.77	□□□□□ -1.49
MBD1-223	ENST00000590215	KRTAP20-2	Q3LI61	65 aa		5.74	□□□□□ -1.49
MBD1-223	ENST00000590215	AHNAK2	Q8IVF2	5795 aa		5.72	□□□□□ -1.49
MBD1-223	ENST00000590215	MT1A	P04731	61 aa		5.71	□□□□□ -1.5
MBD1-223	ENST00000590215	SYNE1	Q8NF91	8797 aa	Known RBP	5.7	□□□□□ -1.5
MBD1-223	ENST00000590215	PRAC1	Q96KF2	57 aa		5.7	□□□□□ -1.5
MBD1-223	ENST00000590215	KRTAP6-1	Q3LI64	71 aa		5.65	□□□□□ -1.5
MBD1-223	ENST00000590215	KRTAP5-10	Q6L8G5	202 aa		5.59	□□□□□ -1.51
MBD1-223	ENST00000590215	KRTAP5-3	Q6L8H2	238 aa		5.59	□□□□□ -1.51
MBD1-223	ENST00000590215	KTN1-AS1	Q86SY8	53 aa		5.5	□□□□□ -1.53
MBD1-223	ENST00000590215	KRTAP9-4	Q9BYQ2	154 aa		5.49	□□□□□ -1.53
MBD1-223	ENST00000590215	KRTAP5-7	Q6L8G8	165 aa		5.44	□□□□□ -1.54
MBD1-223	ENST00000590215	KRTAP5-2	Q701N4	177 aa		5.44	□□□□□ -1.54
MBD1-223	ENST00000590215	KRTAP6-2	Q3LI66	62 aa		5.32	□□□□□ -1.56
MBD1-223	ENST00000590215	MT3	P25713	68 aa		5.21	□□□□□ -1.58
MBD1-223	ENST00000590215	SVIP	Q8NHG7	77 aa		5.17	□□□□□ -1.58
MBD1-223	ENST00000590215	KRTAP4-11	Q9BYQ6	195 aa		5.17	□□□□□ -1.58
MBD1-223	ENST00000590215	KRTAP5-8	O75690	187 aa		4.99	□□□□□ -1.61
MBD1-223	ENST00000590215	AHNAK	Q09666	5890 aa	Known RBP	4.93	□□□□□ -1.62
MBD1-223	ENST00000590215	OBSCN	Q5VST9	7968 aa		4.88	□□□□□ -1.63
MBD1-223	ENST00000590215	MUC5AC	P98088	5654 aa		4.82	□□□□□ -1.64
MBD1-223	ENST00000590215	KRTAP5-1	Q6L8H4	278 aa		4.81	□□□□□ -1.64
MBD1-223	ENST00000590215	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.8	□□□□□ -1.64
MBD1-223	ENST00000590215	LUZP6	Q538Z0	58 aa		4.76	□□□□□ -1.65
MBD1-223	ENST00000590215	LCE1E	Q5T753	118 aa		4.73	□□□□□ -1.65
MBD1-223	ENST00000590215	KRTAP9-9	Q9BYP9	154 aa		4.64	□□□□□ -1.67
MBD1-223	ENST00000590215	LCE3D	Q9BYE3	92 aa		4.51	□□□□□ -1.69
MBD1-223	ENST00000590215	KRTAP4-2	Q9BYR5	136 aa		4.44	□□□□□ -1.7
MBD1-223	ENST00000590215	LCE1C	Q5T751	118 aa		4.39	□□□□□ -1.71
MBD1-223	ENST00000590215	LCE1B	Q5T7P3	118 aa		4.39	□□□□□ -1.71
MBD1-223	ENST00000590215	LCE3E	Q5T5B0	92 aa		4.3	□□□□□ -1.72
MBD1-223	ENST00000590215	NDUFAF8	A1L188	74 aa		4.09	□□□□□ -1.75
MBD1-223	ENST00000590215	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.06	□□□□□ -1.76
MBD1-223	ENST00000590215	KRTAP5-11	Q6L8G4	156 aa		3.95	□□□□□ -1.78
MBD1-223	ENST00000590215	KRTAP4-12	Q9BQ66	201 aa		3.84	□□□□□ -1.79
MBD1-223	ENST00000590215	LCE1F	Q5T754	118 aa		3.77	□□□□□ -1.81
MBD1-223	ENST00000590215	KRTAP21-2	Q3LI59	83 aa		3.74	□□□□□ -1.81
MBD1-223	ENST00000590215	PHGR1	C9JFL3	82 aa		3.39	□□□□□ -1.87
MBD1-223	ENST00000590215	PRM1	P04553	51 aa		3.38	□□□□□ -1.87
MBD1-223	ENST00000590215		A0A0A0MQY5	61 aa		3.37	□□□□□ -1.87
MBD1-223	ENST00000590215	INE1	O15225	51 aa		3.37	□□□□□ -1.87
MBD1-223	ENST00000590215	KRTAP4-4	Q9BYR3	166 aa		3.32	□□□□□ -1.88
MBD1-223	ENST00000590215	MUC19	Q7Z5P9	8384 aa		2.99	□□□□□ -1.93
MBD1-223	ENST00000590215		H3BS24	57 aa		2.74	□□□□□ -1.97
MBD1-223	ENST00000590215	KRTAP21-1	Q3LI58	79 aa		2.47	□□□□□ -2.01
MBD1-223	ENST00000590215	MUC16	Q8WXI7	14507 aa		2.18	□□□□□ -2.06

Retrieved 78 of 20,778 RNA–protein pairs in 130.5 ms