RNA–Protein interactions for RNA: ENST00000590061.1

SMAD4-210, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-210ENST00000590061 MT2AP02795 61 aa3.35□□□□□ -1.87
SMAD4-210ENST00000590061 SPATA8Q6RVD6 105 aa3.35□□□□□ -1.87
SMAD4-210ENST00000590061 SPRR2GQ9BYE4 73 aa3.32□□□□□ -1.88
SMAD4-210ENST00000590061 MT1FP04733 61 aa3.3□□□□□ -1.88
SMAD4-210ENST00000590061 PLAC4Q8WY50 150 aa3.28□□□□□ -1.88
SMAD4-210ENST00000590061 KRTAP19-8Q3LI54 63 aa3.23□□□□□ -1.89
SMAD4-210ENST00000590061 USH2AO75445 5202 aa3.22□□□□□ -1.89
SMAD4-210ENST00000590061 A0A0D9SG42 100 aa3.22□□□□□ -1.89
SMAD4-210ENST00000590061 KRTAP13-4Q3LI77 160 aa3.21□□□□□ -1.9
SMAD4-210ENST00000590061 SSPOA2VEC9 5147 aa3.19□□□□□ -1.9
SMAD4-210ENST00000590061 INE1O15225 51 aa3.19□□□□□ -1.9
SMAD4-210ENST00000590061 OBSCNQ5VST9 7968 aa3.18□□□□□ -1.9
SMAD4-210ENST00000590061 KRTAP12-1P59990 96 aa3.16□□□□□ -1.9
SMAD4-210ENST00000590061 FCGBPQ9Y6R7 5405 aaPredicted RBP3.14□□□□□ -1.91
SMAD4-210ENST00000590061 KRTAP12-2P59991 146 aa3.12□□□□□ -1.91
SMAD4-210ENST00000590061 MACF1Q9UPN3 7388 aaKnown RBP3.1□□□□□ -1.91
SMAD4-210ENST00000590061 MT1BP07438 61 aa3.1□□□□□ -1.91
SMAD4-210ENST00000590061 SYNE2Q8WXH0 6885 aaKnown RBP3.08□□□□□ -1.92
SMAD4-210ENST00000590061 LCE3EQ5T5B0 92 aa3.07□□□□□ -1.92
SMAD4-210ENST00000590061 KRTAP19-6Q3LI70 58 aa3.06□□□□□ -1.92
SMAD4-210ENST00000590061 TNP1P09430 55 aa3.05□□□□□ -1.92
SMAD4-210ENST00000590061 PP632Q6XCG6 107 aa3.04□□□□□ -1.92
SMAD4-210ENST00000590061 KRTAP4-3Q9BYR4 195 aa3.03□□□□□ -1.92
SMAD4-210ENST00000590061 MT1XP80297 61 aa3□□□□□ -1.93
SMAD4-210ENST00000590061 KRTAP6-3Q3LI67 103 aa2.99□□□□□ -1.93
SMAD4-210ENST00000590061 KRTAP5-2Q701N4 177 aa2.97□□□□□ -1.93
SMAD4-210ENST00000590061 C10orf95Q9H7T3 257 aa2.97□□□□□ -1.93
SMAD4-210ENST00000590061 LCE3AQ5TA76 89 aa2.92□□□□□ -1.94
SMAD4-210ENST00000590061 NEBP20929 6669 aa2.91□□□□□ -1.94
SMAD4-210ENST00000590061 MUC12Q9UKN1 5478 aa2.9□□□□□ -1.94
SMAD4-210ENST00000590061 KRTAP20-1Q3LI63 56 aa2.89□□□□□ -1.95
SMAD4-210ENST00000590061 KRTAP8-1Q8IUC2 63 aa2.81□□□□□ -1.96
SMAD4-210ENST00000590061 MDN1Q9NU22 5596 aa2.77□□□□□ -1.97
SMAD4-210ENST00000590061 KRTAP5-5Q701N2 237 aaPredicted RBP2.77□□□□□ -1.97
SMAD4-210ENST00000590061 KMT2DO14686 5537 aa2.76□□□□□ -1.97
SMAD4-210ENST00000590061 KRTAP2-3P0C7H8 128 aa2.75□□□□□ -1.97
SMAD4-210ENST00000590061 KRTAP12-3P60328 96 aa2.75□□□□□ -1.97
SMAD4-210ENST00000590061 KRTAP2-4Q9BYR9 128 aa2.75□□□□□ -1.97
SMAD4-210ENST00000590061 KRTAP19-5Q3LI72 72 aa2.69□□□□□ -1.98
SMAD4-210ENST00000590061 SPRR2FQ96RM1 72 aa2.69□□□□□ -1.98
SMAD4-210ENST00000590061 KRTAP19-7Q3SYF9 63 aa2.67□□□□□ -1.98
SMAD4-210ENST00000590061 MT1EP04732 61 aa2.66□□□□□ -1.98
SMAD4-210ENST00000590061 SPRR2EP22531 72 aa2.66□□□□□ -1.98
SMAD4-210ENST00000590061 SPRR2BP35325 72 aa2.66□□□□□ -1.98
SMAD4-210ENST00000590061 SPRR2AP35326 72 aa2.66□□□□□ -1.98
SMAD4-210ENST00000590061 KRTAP2-1Q9BYU5 128 aa2.65□□□□□ -1.99
SMAD4-210ENST00000590061 MT1GP13640 62 aa2.63□□□□□ -1.99
SMAD4-210ENST00000590061 KRTAP19-3Q7Z4W3 81 aa2.61□□□□□ -1.99
SMAD4-210ENST00000590061 MT1LQ93083 61 aa2.59□□□□□ -1.99
SMAD4-210ENST00000590061 SPRR2DP22532 72 aa2.57□□□□□ -2
SMAD4-210ENST00000590061 GPR98Q8WXG9 6306 aa2.57□□□□□ -2
SMAD4-210ENST00000590061 LCE1CQ5T751 118 aa2.56□□□□□ -2
SMAD4-210ENST00000590061 LCE1BQ5T7P3 118 aa2.56□□□□□ -2
SMAD4-210ENST00000590061 KRTAP5-8O75690 187 aa2.51□□□□□ -2.01
SMAD4-210ENST00000590061 MT1MQ8N339 61 aa2.51□□□□□ -2.01
SMAD4-210ENST00000590061 SPRR5A0A1B0GTR4 108 aa2.46□□□□□ -2.02
SMAD4-210ENST00000590061 DSTQ03001 7570 aaKnown RBP2.44□□□□□ -2.02
SMAD4-210ENST00000590061 LCE3DQ9BYE3 92 aa2.44□□□□□ -2.02
SMAD4-210ENST00000590061 MT4P47944 62 aa2.28□□□□□ -2.04
SMAD4-210ENST00000590061 HMCN1Q96RW7 5635 aa2.27□□□□□ -2.05
SMAD4-210ENST00000590061 KRTAP5-10Q6L8G5 202 aa2.27□□□□□ -2.05
SMAD4-210ENST00000590061 KRTAP12-4P60329 112 aa2.26□□□□□ -2.05
SMAD4-210ENST00000590061 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
SMAD4-210ENST00000590061 MT1AP04731 61 aa2.24□□□□□ -2.05
SMAD4-210ENST00000590061 KRTAP5-7Q6L8G8 165 aa2.2□□□□□ -2.06
SMAD4-210ENST00000590061 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
SMAD4-210ENST00000590061 KRTAP6-1Q3LI64 71 aa2.14□□□□□ -2.07
SMAD4-210ENST00000590061 KRTAP20-2Q3LI61 65 aa2.07□□□□□ -2.08
SMAD4-210ENST00000590061 SYNE1Q8NF91 8797 aaKnown RBP2.03□□□□□ -2.08
SMAD4-210ENST00000590061 KRTAP6-2Q3LI66 62 aa2.01□□□□□ -2.09
SMAD4-210ENST00000590061 MUC5ACP98088 5654 aa1.92□□□□□ -2.1
SMAD4-210ENST00000590061 AHNAKQ09666 5890 aaKnown RBP1.9□□□□□ -2.11
SMAD4-210ENST00000590061 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
SMAD4-210ENST00000590061 KRTAP21-2Q3LI59 83 aa1.86□□□□□ -2.11
SMAD4-210ENST00000590061 PRM1P04553 51 aa1.54□□□□□ -2.16
SMAD4-210ENST00000590061 PHGR1C9JFL3 82 aa1.34□□□□□ -2.19
SMAD4-210ENST00000590061 KRTAP21-1Q3LI58 79 aa1.15□□□□□ -2.23
SMAD4-210ENST00000590061 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 27 ms