RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 MRPL34Q9BQ48 92 aaKnown RBP1.72□□□□□ -2.13
VMP1-208ENST00000588617 H0Y9P7 68 aa1.69□□□□□ -2.14
VMP1-208ENST00000588617 HMCN2Q8NDA2 5059 aa1.67□□□□□ -2.14
VMP1-208ENST00000588617 KRTAP19-3Q7Z4W3 81 aa1.67□□□□□ -2.14
VMP1-208ENST00000588617 HERC1Q15751 4861 aa1.67□□□□□ -2.14
VMP1-208ENST00000588617 FCGBPQ9Y6R7 5405 aaPredicted RBP1.66□□□□□ -2.14
VMP1-208ENST00000588617 MT1HL1P0DM35 61 aa1.66□□□□□ -2.14
VMP1-208ENST00000588617 PCLOQ9Y6V0 5065 aa1.66□□□□□ -2.14
VMP1-208ENST00000588617 LRP2P98164 4655 aa1.65□□□□□ -2.15
VMP1-208ENST00000588617 LPAP08519 4548 aa1.61□□□□□ -2.15
VMP1-208ENST00000588617 C9orf92A6NGG3 77 aa1.61□□□□□ -2.15
VMP1-208ENST00000588617 MUC17Q685J3 4493 aa1.6□□□□□ -2.15
VMP1-208ENST00000588617 DMBT1Q9UGM3 2413 aaPredicted RBP1.58□□□□□ -2.16
VMP1-208ENST00000588617 COX6B2Q6YFQ2 88 aa1.58□□□□□ -2.16
VMP1-208ENST00000588617 MUC2Q02817 5179 aa1.54□□□□□ -2.16
VMP1-208ENST00000588617 A0A1B0GU69 56 aa1.53□□□□□ -2.16
VMP1-208ENST00000588617 H1FX-AS1Q4G0G2 97 aa1.53□□□□□ -2.16
VMP1-208ENST00000588617 FAT4Q6V0I7 4981 aa1.52□□□□□ -2.17
VMP1-208ENST00000588617 UBR4Q5T4S7 5183 aa1.52□□□□□ -2.17
VMP1-208ENST00000588617 H0YAA0 97 aa1.51□□□□□ -2.17
VMP1-208ENST00000588617 S4R3F8 94 aa1.51□□□□□ -2.17
VMP1-208ENST00000588617 FLGP20930 4061 aaPredicted RBP1.5□□□□□ -2.17
VMP1-208ENST00000588617 RNF213Q63HN8 5207 aa1.49□□□□□ -2.17
VMP1-208ENST00000588617 KRTAP19-2Q3LHN2 52 aa1.47□□□□□ -2.17
VMP1-208ENST00000588617 M0QZ58 72 aa1.45□□□□□ -2.18
VMP1-208ENST00000588617 CRIPTQ9P021 101 aa1.43□□□□□ -2.18
VMP1-208ENST00000588617 KRTAP2-3P0C7H8 128 aa1.42□□□□□ -2.18
VMP1-208ENST00000588617 KRTAP2-4Q9BYR9 128 aa1.42□□□□□ -2.18
VMP1-208ENST00000588617 KRTAP2-1Q9BYU5 128 aa1.42□□□□□ -2.18
VMP1-208ENST00000588617 MT1HP80294 61 aa1.39□□□□□ -2.19
VMP1-208ENST00000588617 M0R2T5 61 aa1.37□□□□□ -2.19
VMP1-208ENST00000588617 SPRR2GQ9BYE4 73 aa1.37□□□□□ -2.19
VMP1-208ENST00000588617 MT2AP02795 61 aa1.34□□□□□ -2.19
VMP1-208ENST00000588617 MT1FP04733 61 aa1.32□□□□□ -2.2
VMP1-208ENST00000588617 KRTAP19-8Q3LI54 63 aa1.32□□□□□ -2.2
VMP1-208ENST00000588617 MT1BP07438 61 aa1.27□□□□□ -2.21
VMP1-208ENST00000588617 TNP1P09430 55 aa1.27□□□□□ -2.21
VMP1-208ENST00000588617 USH2AO75445 5202 aa1.27□□□□□ -2.21
VMP1-208ENST00000588617 SSPOA2VEC9 5147 aa1.26□□□□□ -2.21
VMP1-208ENST00000588617 MT1XP80297 61 aa1.24□□□□□ -2.21
VMP1-208ENST00000588617 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
VMP1-208ENST00000588617 KRTAP19-6Q3LI70 58 aa1.2□□□□□ -2.22
VMP1-208ENST00000588617 KRTAP8-1Q8IUC2 63 aa1.2□□□□□ -2.22
VMP1-208ENST00000588617 FSIP2Q5CZC0 6907 aa1.16□□□□□ -2.22
VMP1-208ENST00000588617 KMT2DO14686 5537 aa1.14□□□□□ -2.23
VMP1-208ENST00000588617 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
VMP1-208ENST00000588617 KRTAP19-7Q3SYF9 63 aa1.11□□□□□ -2.23
VMP1-208ENST00000588617 KRTAP21-1Q3LI58 79 aa1.1□□□□□ -2.23
VMP1-208ENST00000588617 KRTAP19-5Q3LI72 72 aa1.1□□□□□ -2.23
VMP1-208ENST00000588617 MT1EP04732 61 aa1.09□□□□□ -2.23
VMP1-208ENST00000588617 MUC12Q9UKN1 5478 aa1.09□□□□□ -2.23
VMP1-208ENST00000588617 MACF1Q9UPN3 7388 aaKnown RBP1.09□□□□□ -2.24
VMP1-208ENST00000588617 MDN1Q9NU22 5596 aa1.09□□□□□ -2.24
VMP1-208ENST00000588617 MT1LQ93083 61 aa1.07□□□□□ -2.24
VMP1-208ENST00000588617 MT1GP13640 62 aa1.06□□□□□ -2.24
VMP1-208ENST00000588617 SPRR2FQ96RM1 72 aa1.03□□□□□ -2.24
VMP1-208ENST00000588617 AHNAK2Q8IVF2 5795 aa1.02□□□□□ -2.25
VMP1-208ENST00000588617 MT1MQ8N339 61 aa1.01□□□□□ -2.25
VMP1-208ENST00000588617 SYNE2Q8WXH0 6885 aaKnown RBP1□□□□□ -2.25
VMP1-208ENST00000588617 DSTQ03001 7570 aaKnown RBP0.99□□□□□ -2.25
VMP1-208ENST00000588617 SPRR2EP22531 72 aa0.96□□□□□ -2.26
VMP1-208ENST00000588617 SPRR2BP35325 72 aa0.96□□□□□ -2.26
VMP1-208ENST00000588617 SPRR2AP35326 72 aa0.96□□□□□ -2.26
VMP1-208ENST00000588617 SPRR2DP22532 72 aa0.94□□□□□ -2.26
VMP1-208ENST00000588617 SYNE1Q8NF91 8797 aaKnown RBP0.94□□□□□ -2.26
VMP1-208ENST00000588617 MT1AP04731 61 aa0.92□□□□□ -2.26
VMP1-208ENST00000588617 GPR98Q8WXG9 6306 aa0.92□□□□□ -2.26
VMP1-208ENST00000588617 NEBP20929 6669 aa0.9□□□□□ -2.27
VMP1-208ENST00000588617 KRTAP20-1Q3LI63 56 aa0.89□□□□□ -2.27
VMP1-208ENST00000588617 KRTAP6-1Q3LI64 71 aa0.88□□□□□ -2.27
VMP1-208ENST00000588617 PHGR1C9JFL3 82 aa0.81□□□□□ -2.28
VMP1-208ENST00000588617 KRTAP20-2Q3LI61 65 aa0.81□□□□□ -2.28
VMP1-208ENST00000588617 KRTAP6-2Q3LI66 62 aa0.81□□□□□ -2.28
VMP1-208ENST00000588617 MT4P47944 62 aa0.77□□□□□ -2.29
VMP1-208ENST00000588617 AHNAKQ09666 5890 aaKnown RBP0.75□□□□□ -2.29
VMP1-208ENST00000588617 MUC5BQ9HC84 5762 aaPredicted RBP0.75□□□□□ -2.29
VMP1-208ENST00000588617 MUC5ACP98088 5654 aa0.72□□□□□ -2.29
VMP1-208ENST00000588617 PRM1P04553 51 aa0.68□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 53 ms