RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-231ENST00000584063 KRTAP4-7Q9BYR0 210 aa4.2□□□□□ -1.74
CDK5RAP3-231ENST00000584063 MACF1Q9UPN3 7388 aaKnown RBP4.18□□□□□ -1.74
CDK5RAP3-231ENST00000584063 KRTAP19-6Q3LI70 58 aa4.18□□□□□ -1.74
CDK5RAP3-231ENST00000584063 SYNE2Q8WXH0 6885 aaKnown RBP4.17□□□□□ -1.74
CDK5RAP3-231ENST00000584063 LCE1DQ5T752 114 aa4.16□□□□□ -1.74
CDK5RAP3-231ENST00000584063 LCE3CQ5T5A8 94 aa4.15□□□□□ -1.75
CDK5RAP3-231ENST00000584063 MUC12Q9UKN1 5478 aa4.14□□□□□ -1.75
CDK5RAP3-231ENST00000584063 KRTAP9-6A8MVA2 160 aa4.14□□□□□ -1.75
CDK5RAP3-231ENST00000584063 KRTAP19-7Q3SYF9 63 aa4.07□□□□□ -1.76
CDK5RAP3-231ENST00000584063 DSTQ03001 7570 aaKnown RBP4.07□□□□□ -1.76
CDK5RAP3-231ENST00000584063 CRCT1Q9UGL9 99 aa4.05□□□□□ -1.76
CDK5RAP3-231ENST00000584063 KRTAP9-6A0A140TA67 174 aa3.97□□□□□ -1.77
CDK5RAP3-231ENST00000584063 KRTAP12-4P60329 112 aa3.97□□□□□ -1.77
CDK5RAP3-231ENST00000584063 KRTAP9-9Q9BYP9 154 aa3.96□□□□□ -1.78
CDK5RAP3-231ENST00000584063 MDN1Q9NU22 5596 aa3.95□□□□□ -1.78
CDK5RAP3-231ENST00000584063 MT1EP04732 61 aa3.93□□□□□ -1.78
CDK5RAP3-231ENST00000584063 MT1LQ93083 61 aa3.92□□□□□ -1.78
CDK5RAP3-231ENST00000584063 SPRR2FQ96RM1 72 aa3.92□□□□□ -1.78
CDK5RAP3-231ENST00000584063 KRTAP4-3Q9BYR4 195 aa3.91□□□□□ -1.78
CDK5RAP3-231ENST00000584063 LOC100996750A0A140TA64 210 aa3.9□□□□□ -1.78
CDK5RAP3-231ENST00000584063 LCE3EQ5T5B0 92 aa3.88□□□□□ -1.79
CDK5RAP3-231ENST00000584063 KRTAP2-3P0C7H8 128 aa3.82□□□□□ -1.8
CDK5RAP3-231ENST00000584063 KRTAP19-4Q3LI73 84 aa3.82□□□□□ -1.8
CDK5RAP3-231ENST00000584063 KRTAP2-4Q9BYR9 128 aa3.82□□□□□ -1.8
CDK5RAP3-231ENST00000584063 KRTAP2-1Q9BYU5 128 aa3.82□□□□□ -1.8
CDK5RAP3-231ENST00000584063 MT1GP13640 62 aa3.79□□□□□ -1.8
CDK5RAP3-231ENST00000584063 LCE4AQ5TA78 99 aa3.79□□□□□ -1.8
CDK5RAP3-231ENST00000584063 SYNE1Q8NF91 8797 aaKnown RBP3.78□□□□□ -1.8
CDK5RAP3-231ENST00000584063 KRTAP19-3Q7Z4W3 81 aa3.76□□□□□ -1.81
CDK5RAP3-231ENST00000584063 KRTAP9-7A8MTY7 169 aa3.75□□□□□ -1.81
CDK5RAP3-231ENST00000584063 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.75□□□□□ -1.81
CDK5RAP3-231ENST00000584063 MT1MQ8N339 61 aa3.71□□□□□ -1.82
CDK5RAP3-231ENST00000584063 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
CDK5RAP3-231ENST00000584063 LCE3DQ9BYE3 92 aa3.69□□□□□ -1.82
CDK5RAP3-231ENST00000584063 SPRR2EP22531 72 aa3.64□□□□□ -1.83
CDK5RAP3-231ENST00000584063 SPRR2BP35325 72 aa3.64□□□□□ -1.83
CDK5RAP3-231ENST00000584063 SPRR2AP35326 72 aa3.64□□□□□ -1.83
CDK5RAP3-231ENST00000584063 KRTAP5-9P26371 169 aa3.63□□□□□ -1.83
CDK5RAP3-231ENST00000584063 KRTAP4-9Q9BYQ8 210 aa3.59□□□□□ -1.83
CDK5RAP3-231ENST00000584063 MT3P25713 68 aa3.57□□□□□ -1.84
CDK5RAP3-231ENST00000584063 LCE3BQ5TA77 95 aa3.57□□□□□ -1.84
CDK5RAP3-231ENST00000584063 SPRR2DP22532 72 aa3.49□□□□□ -1.85
CDK5RAP3-231ENST00000584063 NEBP20929 6669 aa3.45□□□□□ -1.86
CDK5RAP3-231ENST00000584063 PRM1P04553 51 aa3.4□□□□□ -1.87
CDK5RAP3-231ENST00000584063 KRTAP6-1Q3LI64 71 aa3.39□□□□□ -1.87
CDK5RAP3-231ENST00000584063 MT1AP04731 61 aa3.24□□□□□ -1.89
CDK5RAP3-231ENST00000584063 KRTAP5-5Q701N2 237 aaPredicted RBP3.23□□□□□ -1.89
CDK5RAP3-231ENST00000584063 MT4P47944 62 aa3.15□□□□□ -1.9
CDK5RAP3-231ENST00000584063 MUC19Q7Z5P9 8384 aa3.15□□□□□ -1.91
CDK5RAP3-231ENST00000584063 KRTAP20-1Q3LI63 56 aa3.11□□□□□ -1.91
CDK5RAP3-231ENST00000584063 KRTAP4-6Q9BYQ5 205 aa3.09□□□□□ -1.91
CDK5RAP3-231ENST00000584063 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
CDK5RAP3-231ENST00000584063 HMCN1Q96RW7 5635 aa3.07□□□□□ -1.92
CDK5RAP3-231ENST00000584063 KRTAP5-4Q6L8H1 288 aa3.02□□□□□ -1.93
CDK5RAP3-231ENST00000584063 KRTAP20-2Q3LI61 65 aa2.91□□□□□ -1.94
CDK5RAP3-231ENST00000584063 LCE1CQ5T751 118 aa2.82□□□□□ -1.96
CDK5RAP3-231ENST00000584063 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
CDK5RAP3-231ENST00000584063 KRTAP5-3Q6L8H2 238 aa2.77□□□□□ -1.97
CDK5RAP3-231ENST00000584063 KRTAP5-2Q701N4 177 aa2.74□□□□□ -1.97
CDK5RAP3-231ENST00000584063 KRTAP4-12Q9BQ66 201 aa2.73□□□□□ -1.97
CDK5RAP3-231ENST00000584063 AHNAK2Q8IVF2 5795 aa2.64□□□□□ -1.99
CDK5RAP3-231ENST00000584063 MUC5ACP98088 5654 aa2.62□□□□□ -1.99
CDK5RAP3-231ENST00000584063 KRTAP4-11Q9BYQ6 195 aa2.52□□□□□ -2.01
CDK5RAP3-231ENST00000584063 KRTAP5-1Q6L8H4 278 aa2.43□□□□□ -2.02
CDK5RAP3-231ENST00000584063 KRTAP5-8O75690 187 aa2.42□□□□□ -2.02
CDK5RAP3-231ENST00000584063 GPR98Q8WXG9 6306 aa2.39□□□□□ -2.03
CDK5RAP3-231ENST00000584063 KRTAP5-10Q6L8G5 202 aa2.38□□□□□ -2.03
CDK5RAP3-231ENST00000584063 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
CDK5RAP3-231ENST00000584063 KRTAP4-2Q9BYR5 136 aa2.35□□□□□ -2.03
CDK5RAP3-231ENST00000584063 KRTAP5-7Q6L8G8 165 aa2.25□□□□□ -2.05
CDK5RAP3-231ENST00000584063 KRTAP21-1Q3LI58 79 aa2.23□□□□□ -2.05
CDK5RAP3-231ENST00000584063 KRTAP4-4Q9BYR3 166 aa2.2□□□□□ -2.06
CDK5RAP3-231ENST00000584063 KRTAP21-2Q3LI59 83 aa2.15□□□□□ -2.06
CDK5RAP3-231ENST00000584063 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.13□□□□□ -2.07
CDK5RAP3-231ENST00000584063 KRTAP5-11Q6L8G4 156 aa2□□□□□ -2.09
CDK5RAP3-231ENST00000584063 AHNAKQ09666 5890 aaKnown RBP1.95□□□□□ -2.1
CDK5RAP3-231ENST00000584063 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
CDK5RAP3-231ENST00000584063 MUC16Q8WXI7 14507 aa1.14□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 72.2 ms