RNA–Protein interactions for RNA: ENST00000580541.1

SKA2-205, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-205ENST00000580541 KRTAP5-9P26371 169 aa5.46□□□□□ -1.54
SKA2-205ENST00000580541 KMT2DO14686 5537 aa5.46□□□□□ -1.54
SKA2-205ENST00000580541 SPRR2FQ96RM1 72 aa5.43□□□□□ -1.54
SKA2-205ENST00000580541 PMAIP1Q13794 54 aa5.4□□□□□ -1.54
SKA2-205ENST00000580541 LCE3AQ5TA76 89 aa5.39□□□□□ -1.55
SKA2-205ENST00000580541 PRO0628Q9UI54 55 aa5.39□□□□□ -1.55
SKA2-205ENST00000580541 PP632Q6XCG6 107 aa5.35□□□□□ -1.55
SKA2-205ENST00000580541 KRTAP19-5Q3LI72 72 aa5.3□□□□□ -1.56
SKA2-205ENST00000580541 KRTAP19-7Q3SYF9 63 aa5.29□□□□□ -1.56
SKA2-205ENST00000580541 MUC12Q9UKN1 5478 aa5.26□□□□□ -1.57
SKA2-205ENST00000580541 NEBP20929 6669 aa5.25□□□□□ -1.57
SKA2-205ENST00000580541 SPRR2EP22531 72 aa5.25□□□□□ -1.57
SKA2-205ENST00000580541 SPRR2BP35325 72 aa5.25□□□□□ -1.57
SKA2-205ENST00000580541 SPRR2AP35326 72 aa5.25□□□□□ -1.57
SKA2-205ENST00000580541 KRTAP12-3P60328 96 aa5.25□□□□□ -1.57
SKA2-205ENST00000580541 MT1EP04732 61 aa5.24□□□□□ -1.57
SKA2-205ENST00000580541 KRTAP20-1Q3LI63 56 aa5.21□□□□□ -1.58
SKA2-205ENST00000580541 LCE1AQ5T7P2 110 aa5.2□□□□□ -1.58
SKA2-205ENST00000580541 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.17□□□□□ -1.58
SKA2-205ENST00000580541 KRTAP19-3Q7Z4W3 81 aa5.14□□□□□ -1.59
SKA2-205ENST00000580541 MDN1Q9NU22 5596 aa5.11□□□□□ -1.59
SKA2-205ENST00000580541 MT1GP13640 62 aa5.11□□□□□ -1.59
SKA2-205ENST00000580541 MT1LQ93083 61 aa5.09□□□□□ -1.59
SKA2-205ENST00000580541 SPRR2DP22532 72 aa5.07□□□□□ -1.6
SKA2-205ENST00000580541 KTN1-AS1Q86SY8 53 aa5.03□□□□□ -1.6
SKA2-205ENST00000580541 KRTAP2-3P0C7H8 128 aa5□□□□□ -1.61
SKA2-205ENST00000580541 KRTAP2-4Q9BYR9 128 aa5□□□□□ -1.61
SKA2-205ENST00000580541 PRAC1Q96KF2 57 aa4.97□□□□□ -1.61
SKA2-205ENST00000580541 MT1MQ8N339 61 aa4.96□□□□□ -1.62
SKA2-205ENST00000580541 LCE3CQ5T5A8 94 aa4.88□□□□□ -1.63
SKA2-205ENST00000580541 KRTAP5-11Q6L8G4 156 aa4.86□□□□□ -1.63
SKA2-205ENST00000580541 KRTAP2-2Q9BYT5 123 aa4.84□□□□□ -1.63
SKA2-205ENST00000580541 KRTAP2-1Q9BYU5 128 aa4.84□□□□□ -1.63
SKA2-205ENST00000580541 SVIPQ8NHG7 77 aa4.78□□□□□ -1.64
SKA2-205ENST00000580541 KRTAP4-3Q9BYR4 195 aa4.77□□□□□ -1.65
SKA2-205ENST00000580541 DSTQ03001 7570 aaKnown RBP4.76□□□□□ -1.65
SKA2-205ENST00000580541 A0A0A0MQY5 61 aa4.6□□□□□ -1.67
SKA2-205ENST00000580541 KRTAP9-6A8MVA2 160 aa4.48□□□□□ -1.69
SKA2-205ENST00000580541 KRTAP5-5Q701N2 237 aaPredicted RBP4.48□□□□□ -1.69
SKA2-205ENST00000580541 SPRR5A0A1B0GTR4 108 aa4.47□□□□□ -1.69
SKA2-205ENST00000580541 KRTAP5-4Q6L8H1 288 aa4.47□□□□□ -1.69
SKA2-205ENST00000580541 KRTAP5-1Q6L8H4 278 aa4.43□□□□□ -1.7
SKA2-205ENST00000580541 GPR98Q8WXG9 6306 aa4.41□□□□□ -1.7
SKA2-205ENST00000580541 KRTAP12-4P60329 112 aa4.38□□□□□ -1.71
SKA2-205ENST00000580541 MT4P47944 62 aa4.37□□□□□ -1.71
SKA2-205ENST00000580541 MT1AP04731 61 aa4.36□□□□□ -1.71
SKA2-205ENST00000580541 LCE1EQ5T753 118 aa4.36□□□□□ -1.71
SKA2-205ENST00000580541 LUZP6Q538Z0 58 aa4.31□□□□□ -1.72
SKA2-205ENST00000580541 KRTAP4-4Q9BYR3 166 aa4.31□□□□□ -1.72
SKA2-205ENST00000580541 KRTAP6-1Q3LI64 71 aa4.26□□□□□ -1.73
SKA2-205ENST00000580541 MT3P25713 68 aa4.2□□□□□ -1.74
SKA2-205ENST00000580541 KRTAP20-2Q3LI61 65 aa4.19□□□□□ -1.74
SKA2-205ENST00000580541 HMCN1Q96RW7 5635 aa4.18□□□□□ -1.74
SKA2-205ENST00000580541 SYNE1Q8NF91 8797 aaKnown RBP4.16□□□□□ -1.74
SKA2-205ENST00000580541 AHNAK2Q8IVF2 5795 aa4.08□□□□□ -1.76
SKA2-205ENST00000580541 LCE1FQ5T754 118 aa4.08□□□□□ -1.76
SKA2-205ENST00000580541 KRTAP5-10Q6L8G5 202 aa4.05□□□□□ -1.76
SKA2-205ENST00000580541 KRTAP6-2Q3LI66 62 aa4.01□□□□□ -1.77
SKA2-205ENST00000580541 KRTAP5-2Q701N4 177 aa3.98□□□□□ -1.77
SKA2-205ENST00000580541 KRTAP5-7Q6L8G8 165 aa3.93□□□□□ -1.78
SKA2-205ENST00000580541 NDUFAF8A1L188 74 aa3.82□□□□□ -1.8
SKA2-205ENST00000580541 OBSCNQ5VST9 7968 aa3.78□□□□□ -1.8
SKA2-205ENST00000580541 LCE3DQ9BYE3 92 aa3.63□□□□□ -1.83
SKA2-205ENST00000580541 KRTAP5-8O75690 187 aa3.57□□□□□ -1.84
SKA2-205ENST00000580541 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
SKA2-205ENST00000580541 MUC5BQ9HC84 5762 aaPredicted RBP3.39□□□□□ -1.87
SKA2-205ENST00000580541 AHNAKQ09666 5890 aaKnown RBP3.38□□□□□ -1.87
SKA2-205ENST00000580541 MUC5ACP98088 5654 aa3.37□□□□□ -1.87
SKA2-205ENST00000580541 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
SKA2-205ENST00000580541 LCE1BQ5T7P3 118 aa3.31□□□□□ -1.88
SKA2-205ENST00000580541 INE1O15225 51 aa3.23□□□□□ -1.89
SKA2-205ENST00000580541 PRM1P04553 51 aa2.83□□□□□ -1.96
SKA2-205ENST00000580541 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
SKA2-205ENST00000580541 PHGR1C9JFL3 82 aa2.52□□□□□ -2.01
SKA2-205ENST00000580541 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.03
SKA2-205ENST00000580541 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
SKA2-205ENST00000580541 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 98 ms