RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 KRTAP4-7Q9BYR0 210 aa3.89□□□□□ -1.79
VPS53-220ENST00000576149 KRTAP4-9Q9BYQ8 210 aa3.84□□□□□ -1.79
VPS53-220ENST00000576149 USH2AO75445 5202 aa3.81□□□□□ -1.8
VPS53-220ENST00000576149 KRTAP19-5Q3LI72 72 aa3.76□□□□□ -1.81
VPS53-220ENST00000576149 KRTAP4-11Q9BYQ6 195 aa3.73□□□□□ -1.81
VPS53-220ENST00000576149 KRTAP4-2Q9BYR5 136 aa3.73□□□□□ -1.81
VPS53-220ENST00000576149 KRTAP2-2Q9BYT5 123 aa3.71□□□□□ -1.82
VPS53-220ENST00000576149 KMT2DO14686 5537 aa3.7□□□□□ -1.82
VPS53-220ENST00000576149 LCE3CQ5T5A8 94 aa3.67□□□□□ -1.82
VPS53-220ENST00000576149 KRTAP19-7Q3SYF9 63 aa3.64□□□□□ -1.83
VPS53-220ENST00000576149 KRTAP19-6Q3LI70 58 aa3.6□□□□□ -1.83
VPS53-220ENST00000576149 SSPOA2VEC9 5147 aa3.59□□□□□ -1.83
VPS53-220ENST00000576149 MT1EP04732 61 aa3.54□□□□□ -1.84
VPS53-220ENST00000576149 KRTAP9-6A8MVA2 160 aa3.52□□□□□ -1.85
VPS53-220ENST00000576149 MT1LQ93083 61 aa3.52□□□□□ -1.85
VPS53-220ENST00000576149 LCE1AQ5T7P2 110 aa3.48□□□□□ -1.85
VPS53-220ENST00000576149 LCE1FQ5T754 118 aa3.44□□□□□ -1.86
VPS53-220ENST00000576149 FSIP2Q5CZC0 6907 aa3.43□□□□□ -1.86
VPS53-220ENST00000576149 KRTAP2-3P0C7H8 128 aa3.38□□□□□ -1.87
VPS53-220ENST00000576149 KRTAP2-4Q9BYR9 128 aa3.38□□□□□ -1.87
VPS53-220ENST00000576149 KRTAP2-1Q9BYU5 128 aa3.38□□□□□ -1.87
VPS53-220ENST00000576149 FCGBPQ9Y6R7 5405 aaPredicted RBP3.35□□□□□ -1.87
VPS53-220ENST00000576149 KRTAP19-3Q7Z4W3 81 aa3.33□□□□□ -1.88
VPS53-220ENST00000576149 MT1GP13640 62 aa3.32□□□□□ -1.88
VPS53-220ENST00000576149 LCE1EQ5T753 118 aa3.32□□□□□ -1.88
VPS53-220ENST00000576149 MT1MQ8N339 61 aa3.31□□□□□ -1.88
VPS53-220ENST00000576149 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
VPS53-220ENST00000576149 MUC12Q9UKN1 5478 aa3.27□□□□□ -1.89
VPS53-220ENST00000576149 KRTAP6-3Q3LI67 103 aa3.27□□□□□ -1.89
VPS53-220ENST00000576149 SPRR2FQ96RM1 72 aa3.24□□□□□ -1.89
VPS53-220ENST00000576149 KRTAP5-3Q6L8H2 238 aa3.18□□□□□ -1.9
VPS53-220ENST00000576149 MT3P25713 68 aa3.18□□□□□ -1.9
VPS53-220ENST00000576149 MACF1Q9UPN3 7388 aaKnown RBP3.16□□□□□ -1.9
VPS53-220ENST00000576149 CRCT1Q9UGL9 99 aa3.15□□□□□ -1.9
VPS53-220ENST00000576149 KRTAP5-9P26371 169 aa3.08□□□□□ -1.92
VPS53-220ENST00000576149 DSTQ03001 7570 aaKnown RBP3.07□□□□□ -1.92
VPS53-220ENST00000576149 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
VPS53-220ENST00000576149 SYNE2Q8WXH0 6885 aaKnown RBP3.03□□□□□ -1.92
VPS53-220ENST00000576149 MDN1Q9NU22 5596 aa3.01□□□□□ -1.93
VPS53-220ENST00000576149 KRTAP6-1Q3LI64 71 aa2.98□□□□□ -1.93
VPS53-220ENST00000576149 MT1AP04731 61 aa2.97□□□□□ -1.93
VPS53-220ENST00000576149 SPRR2EP22531 72 aa2.97□□□□□ -1.93
VPS53-220ENST00000576149 SPRR2BP35325 72 aa2.97□□□□□ -1.93
VPS53-220ENST00000576149 SPRR2AP35326 72 aa2.97□□□□□ -1.93
VPS53-220ENST00000576149 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
VPS53-220ENST00000576149 KRTAP5-5Q701N2 237 aaPredicted RBP2.96□□□□□ -1.94
VPS53-220ENST00000576149 SYNE1Q8NF91 8797 aaKnown RBP2.85□□□□□ -1.95
VPS53-220ENST00000576149 SPRR2DP22532 72 aa2.85□□□□□ -1.95
VPS53-220ENST00000576149 LCE3DQ9BYE3 92 aa2.81□□□□□ -1.96
VPS53-220ENST00000576149 KRTAP6-2Q3LI66 62 aa2.69□□□□□ -1.98
VPS53-220ENST00000576149 KRTAP5-4Q6L8H1 288 aa2.65□□□□□ -1.99
VPS53-220ENST00000576149 KRTAP20-1Q3LI63 56 aa2.63□□□□□ -1.99
VPS53-220ENST00000576149 NEBP20929 6669 aa2.62□□□□□ -1.99
VPS53-220ENST00000576149 PRM1P04553 51 aa2.59□□□□□ -2
VPS53-220ENST00000576149 HMCN1Q96RW7 5635 aa2.56□□□□□ -2
VPS53-220ENST00000576149 KRTAP5-11Q6L8G4 156 aa2.52□□□□□ -2.01
VPS53-220ENST00000576149 MT4P47944 62 aa2.5□□□□□ -2.01
VPS53-220ENST00000576149 OBSCNQ5VST9 7968 aa2.48□□□□□ -2.01
VPS53-220ENST00000576149 KRTAP20-2Q3LI61 65 aa2.48□□□□□ -2.01
VPS53-220ENST00000576149 KRTAP5-2Q701N4 177 aa2.46□□□□□ -2.02
VPS53-220ENST00000576149 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.45□□□□□ -2.02
VPS53-220ENST00000576149 GPR98Q8WXG9 6306 aa2.36□□□□□ -2.03
VPS53-220ENST00000576149 MUC5ACP98088 5654 aa2.2□□□□□ -2.06
VPS53-220ENST00000576149 LCE1CQ5T751 118 aa2.15□□□□□ -2.07
VPS53-220ENST00000576149 LCE1BQ5T7P3 118 aa2.15□□□□□ -2.07
VPS53-220ENST00000576149 KRTAP5-1Q6L8H4 278 aa2.15□□□□□ -2.07
VPS53-220ENST00000576149 MUC19Q7Z5P9 8384 aa2.14□□□□□ -2.07
VPS53-220ENST00000576149 KRTAP5-10Q6L8G5 202 aa2.11□□□□□ -2.07
VPS53-220ENST00000576149 KRTAP5-7Q6L8G8 165 aa2.07□□□□□ -2.08
VPS53-220ENST00000576149 AHNAK2Q8IVF2 5795 aa2.06□□□□□ -2.08
VPS53-220ENST00000576149 KRTAP4-4Q9BYR3 166 aa2.03□□□□□ -2.08
VPS53-220ENST00000576149 KRTAP5-8O75690 187 aa1.98□□□□□ -2.09
VPS53-220ENST00000576149 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
VPS53-220ENST00000576149 AHNAKQ09666 5890 aaKnown RBP1.93□□□□□ -2.1
VPS53-220ENST00000576149 MUC5BQ9HC84 5762 aaPredicted RBP1.85□□□□□ -2.11
VPS53-220ENST00000576149 KRTAP21-1Q3LI58 79 aa1.73□□□□□ -2.13
VPS53-220ENST00000576149 PHGR1C9JFL3 82 aa1.56□□□□□ -2.16
VPS53-220ENST00000576149 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 71.8 ms