RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 KRTAP9-6A8MVA2 160 aa4.83□□□□□ -1.64
VPS33B-208ENST00000574755 SYNE2Q8WXH0 6885 aaKnown RBP4.8□□□□□ -1.64
VPS33B-208ENST00000574755 CRCT1Q9UGL9 99 aa4.78□□□□□ -1.64
VPS33B-208ENST00000574755 MUC12Q9UKN1 5478 aa4.77□□□□□ -1.65
VPS33B-208ENST00000574755 KRTAP19-3Q7Z4W3 81 aa4.74□□□□□ -1.65
VPS33B-208ENST00000574755 KRTAP9-6A0A140TA67 174 aa4.73□□□□□ -1.65
VPS33B-208ENST00000574755 SPRR2FQ96RM1 72 aa4.72□□□□□ -1.65
VPS33B-208ENST00000574755 MT1GP13640 62 aa4.71□□□□□ -1.66
VPS33B-208ENST00000574755 MT1MQ8N339 61 aa4.68□□□□□ -1.66
VPS33B-208ENST00000574755 KRTAP4-3Q9BYR4 195 aa4.67□□□□□ -1.66
VPS33B-208ENST00000574755 LCE5AQ5TCM9 118 aa4.61□□□□□ -1.67
VPS33B-208ENST00000574755 LOC100996750A0A140TA64 210 aa4.59□□□□□ -1.67
VPS33B-208ENST00000574755 MDN1Q9NU22 5596 aa4.57□□□□□ -1.68
VPS33B-208ENST00000574755 KRTAP2-3P0C7H8 128 aa4.56□□□□□ -1.68
VPS33B-208ENST00000574755 KRTAP2-4Q9BYR9 128 aa4.56□□□□□ -1.68
VPS33B-208ENST00000574755 KRTAP2-1Q9BYU5 128 aa4.56□□□□□ -1.68
VPS33B-208ENST00000574755 DSTQ03001 7570 aaKnown RBP4.54□□□□□ -1.68
VPS33B-208ENST00000574755 INE1O15225 51 aa4.49□□□□□ -1.69
VPS33B-208ENST00000574755 KRTAP5-9P26371 169 aa4.49□□□□□ -1.69
VPS33B-208ENST00000574755 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.45□□□□□ -1.7
VPS33B-208ENST00000574755 LCE1AQ5T7P2 110 aa4.43□□□□□ -1.7
VPS33B-208ENST00000574755 SPRR2EP22531 72 aa4.38□□□□□ -1.71
VPS33B-208ENST00000574755 SPRR2BP35325 72 aa4.38□□□□□ -1.71
VPS33B-208ENST00000574755 SPRR2AP35326 72 aa4.38□□□□□ -1.71
VPS33B-208ENST00000574755 KRTAP6-3Q3LI67 103 aa4.25□□□□□ -1.73
VPS33B-208ENST00000574755 SPRR2DP22532 72 aa4.2□□□□□ -1.74
VPS33B-208ENST00000574755 KRTAP9-7A8MTY7 169 aa4.19□□□□□ -1.74
VPS33B-208ENST00000574755 KRTAP6-1Q3LI64 71 aa4.18□□□□□ -1.74
VPS33B-208ENST00000574755 LCE3BQ5TA77 95 aa4.18□□□□□ -1.74
VPS33B-208ENST00000574755 MT1AP04731 61 aa4.17□□□□□ -1.74
VPS33B-208ENST00000574755 KRTAP5-5Q701N2 237 aaPredicted RBP4.17□□□□□ -1.74
VPS33B-208ENST00000574755 NEBP20929 6669 aa4.16□□□□□ -1.74
VPS33B-208ENST00000574755 SYNE1Q8NF91 8797 aaKnown RBP4.08□□□□□ -1.76
VPS33B-208ENST00000574755 KRTAP4-9Q9BYQ8 210 aa4.01□□□□□ -1.77
VPS33B-208ENST00000574755 KRTAP12-4P60329 112 aa3.98□□□□□ -1.77
VPS33B-208ENST00000574755 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
VPS33B-208ENST00000574755 LCE3DQ9BYE3 92 aa3.87□□□□□ -1.79
VPS33B-208ENST00000574755 KRTAP5-4Q6L8H1 288 aa3.81□□□□□ -1.8
VPS33B-208ENST00000574755 KRTAP6-2Q3LI66 62 aa3.81□□□□□ -1.8
VPS33B-208ENST00000574755 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
VPS33B-208ENST00000574755 MT3P25713 68 aa3.77□□□□□ -1.81
VPS33B-208ENST00000574755 KRTAP20-1Q3LI63 56 aa3.71□□□□□ -1.82
VPS33B-208ENST00000574755 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
VPS33B-208ENST00000574755 MT4P47944 62 aa3.69□□□□□ -1.82
VPS33B-208ENST00000574755 KRTAP4-6Q9BYQ5 205 aa3.67□□□□□ -1.82
VPS33B-208ENST00000574755 LCE4AQ5TA78 99 aa3.67□□□□□ -1.82
VPS33B-208ENST00000574755 KRTAP2-2Q9BYT5 123 aa3.62□□□□□ -1.83
VPS33B-208ENST00000574755 HMCN1Q96RW7 5635 aa3.61□□□□□ -1.83
VPS33B-208ENST00000574755 KRTAP20-2Q3LI61 65 aa3.59□□□□□ -1.83
VPS33B-208ENST00000574755 LCE1DQ5T752 114 aa3.53□□□□□ -1.84
VPS33B-208ENST00000574755 KRTAP5-2Q701N4 177 aa3.51□□□□□ -1.85
VPS33B-208ENST00000574755 PRM1P04553 51 aa3.48□□□□□ -1.85
VPS33B-208ENST00000574755 GPR98Q8WXG9 6306 aa3.44□□□□□ -1.86
VPS33B-208ENST00000574755 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
VPS33B-208ENST00000574755 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
VPS33B-208ENST00000574755 AHNAK2Q8IVF2 5795 aa3.13□□□□□ -1.91
VPS33B-208ENST00000574755 MUC5ACP98088 5654 aa3.1□□□□□ -1.91
VPS33B-208ENST00000574755 LCE1BQ5T7P3 118 aa3.08□□□□□ -1.92
VPS33B-208ENST00000574755 KRTAP4-11Q9BYQ6 195 aa3.04□□□□□ -1.92
VPS33B-208ENST00000574755 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
VPS33B-208ENST00000574755 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
VPS33B-208ENST00000574755 KRTAP9-9Q9BYP9 154 aa3□□□□□ -1.93
VPS33B-208ENST00000574755 LCE1CQ5T751 118 aa2.97□□□□□ -1.93
VPS33B-208ENST00000574755 KRTAP4-2Q9BYR5 136 aa2.97□□□□□ -1.93
VPS33B-208ENST00000574755 KRTAP5-8O75690 187 aa2.91□□□□□ -1.94
VPS33B-208ENST00000574755 KRTAP5-7Q6L8G8 165 aa2.91□□□□□ -1.94
VPS33B-208ENST00000574755 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
VPS33B-208ENST00000574755 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.79□□□□□ -1.96
VPS33B-208ENST00000574755 KRTAP21-2Q3LI59 83 aa2.71□□□□□ -1.98
VPS33B-208ENST00000574755 AHNAKQ09666 5890 aaKnown RBP2.71□□□□□ -1.98
VPS33B-208ENST00000574755 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
VPS33B-208ENST00000574755 KRTAP5-11Q6L8G4 156 aa2.59□□□□□ -2
VPS33B-208ENST00000574755 KRTAP4-12Q9BQ66 201 aa2.46□□□□□ -2.02
VPS33B-208ENST00000574755 KRTAP4-4Q9BYR3 166 aa2.46□□□□□ -2.02
VPS33B-208ENST00000574755 PHGR1C9JFL3 82 aa2.23□□□□□ -2.05
VPS33B-208ENST00000574755 MUC19Q7Z5P9 8384 aa2.23□□□□□ -2.05
VPS33B-208ENST00000574755 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
VPS33B-208ENST00000574755 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 83 ms