RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	KRTAP4-3	Q9BYR4	195 aa		5.69	□□□□□ -1.5
VPS53-215	ENST00000573028	LOC100996750	A0A140TA64	210 aa		5.69	□□□□□ -1.5
VPS53-215	ENST00000573028	CRCT1	Q9UGL9	99 aa		5.66	□□□□□ -1.5
VPS53-215	ENST00000573028	MUC12	Q9UKN1	5478 aa		5.65	□□□□□ -1.5
VPS53-215	ENST00000573028	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	5.63	□□□□□ -1.51
VPS53-215	ENST00000573028	OBSCN	Q5VST9	7968 aa		5.63	□□□□□ -1.51
VPS53-215	ENST00000573028	MT1G	P13640	62 aa		5.61	□□□□□ -1.51
VPS53-215	ENST00000573028	KRTAP19-4	Q3LI73	84 aa		5.61	□□□□□ -1.51
VPS53-215	ENST00000573028	DST	Q03001	7570 aa	Known RBP	5.59	□□□□□ -1.51
VPS53-215	ENST00000573028	KRTAP19-6	Q3LI70	58 aa		5.55	□□□□□ -1.52
VPS53-215	ENST00000573028	LCE4A	Q5TA78	99 aa		5.51	□□□□□ -1.53
VPS53-215	ENST00000573028	MT1M	Q8N339	61 aa		5.46	□□□□□ -1.54
VPS53-215	ENST00000573028	KRTAP19-3	Q7Z4W3	81 aa		5.43	□□□□□ -1.54
VPS53-215	ENST00000573028	KRTAP9-6	A0A140TA67	174 aa		5.39	□□□□□ -1.55
VPS53-215	ENST00000573028	KRTAP9-7	A8MTY7	169 aa		5.39	□□□□□ -1.55
VPS53-215	ENST00000573028	SYNE1	Q8NF91	8797 aa	Known RBP	5.35	□□□□□ -1.55
VPS53-215	ENST00000573028	KRTAP12-4	P60329	112 aa		5.33	□□□□□ -1.56
VPS53-215	ENST00000573028	SPRR2F	Q96RM1	72 aa		5.31	□□□□□ -1.56
VPS53-215	ENST00000573028	KRTAP9-4	Q9BYQ2	154 aa		5.3	□□□□□ -1.56
VPS53-215	ENST00000573028	LCE3B	Q5TA77	95 aa		5.26	□□□□□ -1.57
VPS53-215	ENST00000573028	KRTAP9-9	Q9BYP9	154 aa		5.25	□□□□□ -1.57
VPS53-215	ENST00000573028	KRTAP4-9	Q9BYQ8	210 aa		5.2	□□□□□ -1.58
VPS53-215	ENST00000573028	LCE5A	Q5TCM9	118 aa		5.19	□□□□□ -1.58
VPS53-215	ENST00000573028	MACF1	Q9UPN3	7388 aa	Known RBP	5.18	□□□□□ -1.58
VPS53-215	ENST00000573028	SYNE2	Q8WXH0	6885 aa	Known RBP	5.11	□□□□□ -1.59
VPS53-215	ENST00000573028	KRTAP4-12	Q9BQ66	201 aa		5.04	□□□□□ -1.6
VPS53-215	ENST00000573028	MDN1	Q9NU22	5596 aa		5.04	□□□□□ -1.6
VPS53-215	ENST00000573028	KRTAP6-1	Q3LI64	71 aa		5.02	□□□□□ -1.61
VPS53-215	ENST00000573028	KRTAP4-6	Q9BYQ5	205 aa		5.02	□□□□□ -1.61
VPS53-215	ENST00000573028	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS53-215	ENST00000573028	KRTAP9-2	Q9BYQ4	174 aa		4.96	□□□□□ -1.62
VPS53-215	ENST00000573028	LCE3D	Q9BYE3	92 aa		4.9	□□□□□ -1.63
VPS53-215	ENST00000573028	MT1A	P04731	61 aa		4.87	□□□□□ -1.63
VPS53-215	ENST00000573028	LCE3E	Q5T5B0	92 aa		4.82	□□□□□ -1.64
VPS53-215	ENST00000573028	LCE1A	Q5T7P2	110 aa		4.81	□□□□□ -1.64
VPS53-215	ENST00000573028	SPRR2E	P22531	72 aa		4.76	□□□□□ -1.65
VPS53-215	ENST00000573028	SPRR2B	P35325	72 aa		4.76	□□□□□ -1.65
VPS53-215	ENST00000573028	SPRR2A	P35326	72 aa		4.76	□□□□□ -1.65
VPS53-215	ENST00000573028	PRM1	P04553	51 aa		4.73	□□□□□ -1.65
VPS53-215	ENST00000573028	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.7	□□□□□ -1.66
VPS53-215	ENST00000573028	KRTAP5-9	P26371	169 aa		4.63	□□□□□ -1.67
VPS53-215	ENST00000573028	KRTAP6-2	Q3LI66	62 aa		4.54	□□□□□ -1.68
VPS53-215	ENST00000573028	SPRR2D	P22532	72 aa		4.53	□□□□□ -1.68
VPS53-215	ENST00000573028	LCE1D	Q5T752	114 aa		4.46	□□□□□ -1.7
VPS53-215	ENST00000573028	MT3	P25713	68 aa		4.4	□□□□□ -1.7
VPS53-215	ENST00000573028	LCE1F	Q5T754	118 aa		4.3	□□□□□ -1.72
VPS53-215	ENST00000573028	KRTAP6-3	Q3LI67	103 aa		4.29	□□□□□ -1.72
VPS53-215	ENST00000573028	KRTAP4-11	Q9BYQ6	195 aa		4.22	□□□□□ -1.73
VPS53-215	ENST00000573028	KRTAP2-2	Q9BYT5	123 aa		4.11	□□□□□ -1.75
VPS53-215	ENST00000573028	MT4	P47944	62 aa		4.11	□□□□□ -1.75
VPS53-215	ENST00000573028	MUC19	Q7Z5P9	8384 aa		4.08	□□□□□ -1.76
VPS53-215	ENST00000573028	KRTAP4-2	Q9BYR5	136 aa		4.03	□□□□□ -1.76
VPS53-215	ENST00000573028	KRTAP5-4	Q6L8H1	288 aa		4.02	□□□□□ -1.77
VPS53-215	ENST00000573028	NEB	P20929	6669 aa		3.96	□□□□□ -1.78
VPS53-215	ENST00000573028	KRTAP20-2	Q3LI61	65 aa		3.89	□□□□□ -1.79
VPS53-215	ENST00000573028	LCE1E	Q5T753	118 aa		3.86	□□□□□ -1.79
VPS53-215	ENST00000573028	HMCN1	Q96RW7	5635 aa		3.83	□□□□□ -1.8
VPS53-215	ENST00000573028	MUC5AC	P98088	5654 aa		3.8	□□□□□ -1.8
VPS53-215	ENST00000573028	KRTAP5-2	Q701N4	177 aa		3.78	□□□□□ -1.8
VPS53-215	ENST00000573028	LCE1B	Q5T7P3	118 aa		3.72	□□□□□ -1.81
VPS53-215	ENST00000573028	KRTAP5-3	Q6L8H2	238 aa		3.62	□□□□□ -1.83
VPS53-215	ENST00000573028	KRTAP20-1	Q3LI63	56 aa		3.56	□□□□□ -1.84
VPS53-215	ENST00000573028	KRTAP5-10	Q6L8G5	202 aa		3.5	□□□□□ -1.85
VPS53-215	ENST00000573028	KRTAP5-1	Q6L8H4	278 aa		3.36	□□□□□ -1.87
VPS53-215	ENST00000573028	LCE1C	Q5T751	118 aa		3.28	□□□□□ -1.88
VPS53-215	ENST00000573028	KRTAP21-2	Q3LI59	83 aa		3.17	□□□□□ -1.9
VPS53-215	ENST00000573028	KRTAP4-4	Q9BYR3	166 aa		3.12	□□□□□ -1.91
VPS53-215	ENST00000573028	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.03	□□□□□ -1.92
VPS53-215	ENST00000573028	AHNAK2	Q8IVF2	5795 aa		3.02	□□□□□ -1.93
VPS53-215	ENST00000573028	KRTAP5-8	O75690	187 aa		3	□□□□□ -1.93
VPS53-215	ENST00000573028	KRTAP5-11	Q6L8G4	156 aa		2.95	□□□□□ -1.94
VPS53-215	ENST00000573028	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.93	□□□□□ -1.94
VPS53-215	ENST00000573028	KRTAP21-1	Q3LI58	79 aa		2.85	□□□□□ -1.95
VPS53-215	ENST00000573028	KRTAP5-7	Q6L8G8	165 aa		2.83	□□□□□ -1.96
VPS53-215	ENST00000573028	GPR98	Q8WXG9	6306 aa		2.61	□□□□□ -1.99
VPS53-215	ENST00000573028	PHGR1	C9JFL3	82 aa		2.44	□□□□□ -2.02
VPS53-215	ENST00000573028	AHNAK	Q09666	5890 aa	Known RBP	2.23	□□□□□ -2.05
VPS53-215	ENST00000573028	MUC16	Q8WXI7	14507 aa		1.64	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 10.9 ms