RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PSPHP1O15172 72 aa4.91□□□□□ -1.62
CLK3-224ENST00000568605 KRTAP2-3P0C7H8 128 aa4.91□□□□□ -1.62
CLK3-224ENST00000568605 SPRR2DP22532 72 aa4.91□□□□□ -1.62
CLK3-224ENST00000568605 LCE4AQ5TA78 99 aa4.91□□□□□ -1.62
CLK3-224ENST00000568605 KRTAP2-4Q9BYR9 128 aa4.91□□□□□ -1.62
CLK3-224ENST00000568605 K7ERS5 55 aa4.9□□□□□ -1.63
CLK3-224ENST00000568605 C10orf95Q9H7T3 257 aa4.88□□□□□ -1.63
CLK3-224ENST00000568605 KRTAP19-7Q3SYF9 63 aa4.85□□□□□ -1.63
CLK3-224ENST00000568605 KRTAP23-1A1A580 65 aa4.84□□□□□ -1.63
CLK3-224ENST00000568605 PRO0628Q9UI54 55 aa4.84□□□□□ -1.63
CLK3-224ENST00000568605 LCE5AQ5TCM9 118 aa4.83□□□□□ -1.64
CLK3-224ENST00000568605 MT1EP04732 61 aa4.82□□□□□ -1.64
CLK3-224ENST00000568605 A6NED7 52 aa4.81□□□□□ -1.64
CLK3-224ENST00000568605 KRTAP19-5Q3LI72 72 aa4.78□□□□□ -1.64
CLK3-224ENST00000568605 LCE3AQ5TA76 89 aa4.77□□□□□ -1.65
CLK3-224ENST00000568605 KRTAP19-3Q7Z4W3 81 aa4.77□□□□□ -1.65
CLK3-224ENST00000568605 KRTAP19-4Q3LI73 84 aa4.76□□□□□ -1.65
CLK3-224ENST00000568605 KRTAP2-2Q9BYT5 123 aa4.76□□□□□ -1.65
CLK3-224ENST00000568605 KRTAP2-1Q9BYU5 128 aa4.76□□□□□ -1.65
CLK3-224ENST00000568605 KRTAP25-1Q3LHN0 102 aa4.73□□□□□ -1.65
CLK3-224ENST00000568605 PP632Q6XCG6 107 aa4.7□□□□□ -1.66
CLK3-224ENST00000568605 MT1GP13640 62 aa4.68□□□□□ -1.66
CLK3-224ENST00000568605 MT1LQ93083 61 aa4.63□□□□□ -1.67
CLK3-224ENST00000568605 CDC42SE1Q9NRR8 79 aa4.63□□□□□ -1.67
CLK3-224ENST00000568605 KRTAP12-3P60328 96 aa4.61□□□□□ -1.67
CLK3-224ENST00000568605 PMAIP1Q13794 54 aa4.59□□□□□ -1.67
CLK3-224ENST00000568605 MT1MQ8N339 61 aa4.58□□□□□ -1.68
CLK3-224ENST00000568605 DSTQ03001 7570 aaKnown RBP4.56□□□□□ -1.68
CLK3-224ENST00000568605 ROMO1P60602 79 aa4.52□□□□□ -1.69
CLK3-224ENST00000568605 BRK1Q8WUW1 75 aa4.51□□□□□ -1.69
CLK3-224ENST00000568605 A0A0A0MQY5 61 aa4.44□□□□□ -1.7
CLK3-224ENST00000568605 KRTAP4-3Q9BYR4 195 aa4.4□□□□□ -1.71
CLK3-224ENST00000568605 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
CLK3-224ENST00000568605 KTN1-AS1Q86SY8 53 aa4.36□□□□□ -1.71
CLK3-224ENST00000568605 KRTAP5-4Q6L8H1 288 aa4.26□□□□□ -1.73
CLK3-224ENST00000568605 MT4P47944 62 aa4.25□□□□□ -1.73
CLK3-224ENST00000568605 LCE3CQ5T5A8 94 aa4.25□□□□□ -1.73
CLK3-224ENST00000568605 GPR98Q8WXG9 6306 aa4.19□□□□□ -1.74
CLK3-224ENST00000568605 KRTAP5-5Q701N2 237 aaPredicted RBP4.17□□□□□ -1.74
CLK3-224ENST00000568605 HMCN1Q96RW7 5635 aa4.14□□□□□ -1.75
CLK3-224ENST00000568605 PRAC1Q96KF2 57 aa4.09□□□□□ -1.75
CLK3-224ENST00000568605 KRTAP12-4P60329 112 aa4.08□□□□□ -1.76
CLK3-224ENST00000568605 SPRR5A0A1B0GTR4 108 aa4.04□□□□□ -1.76
CLK3-224ENST00000568605 KRTAP20-2Q3LI61 65 aa4.02□□□□□ -1.77
CLK3-224ENST00000568605 SYNE1Q8NF91 8797 aaKnown RBP3.99□□□□□ -1.77
CLK3-224ENST00000568605 MT1AP04731 61 aa3.97□□□□□ -1.77
CLK3-224ENST00000568605 KRTAP9-6A8MVA2 160 aa3.94□□□□□ -1.78
CLK3-224ENST00000568605 AHNAK2Q8IVF2 5795 aa3.91□□□□□ -1.78
CLK3-224ENST00000568605 KRTAP6-1Q3LI64 71 aa3.89□□□□□ -1.79
CLK3-224ENST00000568605 KRTAP5-10Q6L8G5 202 aa3.87□□□□□ -1.79
CLK3-224ENST00000568605 KRTAP5-2Q701N4 177 aa3.77□□□□□ -1.81
CLK3-224ENST00000568605 KRTAP5-7Q6L8G8 165 aa3.74□□□□□ -1.81
CLK3-224ENST00000568605 KRTAP6-2Q3LI66 62 aa3.7□□□□□ -1.82
CLK3-224ENST00000568605 LUZP6Q538Z0 58 aa3.68□□□□□ -1.82
CLK3-224ENST00000568605 MT3P25713 68 aa3.63□□□□□ -1.83
CLK3-224ENST00000568605 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.62□□□□□ -1.83
CLK3-224ENST00000568605 NDUFAF8A1L188 74 aa3.51□□□□□ -1.85
CLK3-224ENST00000568605 KRTAP5-8O75690 187 aa3.49□□□□□ -1.85
CLK3-224ENST00000568605 OBSCNQ5VST9 7968 aa3.48□□□□□ -1.85
CLK3-224ENST00000568605 KRTAP5-11Q6L8G4 156 aa3.41□□□□□ -1.86
CLK3-224ENST00000568605 KRTAP5-1Q6L8H4 278 aa3.32□□□□□ -1.88
CLK3-224ENST00000568605 LCE1EQ5T753 118 aa3.29□□□□□ -1.88
CLK3-224ENST00000568605 MUC5ACP98088 5654 aa3.23□□□□□ -1.89
CLK3-224ENST00000568605 AHNAKQ09666 5890 aaKnown RBP3.19□□□□□ -1.9
CLK3-224ENST00000568605 MUC5BQ9HC84 5762 aaPredicted RBP3.18□□□□□ -1.9
CLK3-224ENST00000568605 LCE3DQ9BYE3 92 aa3.11□□□□□ -1.91
CLK3-224ENST00000568605 INE1O15225 51 aa3.09□□□□□ -1.91
CLK3-224ENST00000568605 LCE1BQ5T7P3 118 aa3.07□□□□□ -1.92
CLK3-224ENST00000568605 LCE1CQ5T751 118 aa3.04□□□□□ -1.92
CLK3-224ENST00000568605 KRTAP4-4Q9BYR3 166 aa3.01□□□□□ -1.93
CLK3-224ENST00000568605 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
CLK3-224ENST00000568605 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
CLK3-224ENST00000568605 KRTAP21-2Q3LI59 83 aa2.56□□□□□ -2
CLK3-224ENST00000568605 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
CLK3-224ENST00000568605 PRM1P04553 51 aa2.31□□□□□ -2.04
CLK3-224ENST00000568605 MUC19Q7Z5P9 8384 aa2.16□□□□□ -2.06
CLK3-224ENST00000568605 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
CLK3-224ENST00000568605 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 10.9 ms