RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 KRTAP10-10P60014 251 aa3.11□□□□□ -1.91
HERPUD1-209ENST00000564678 KRTAP4-4Q9BYR3 166 aa3.1□□□□□ -1.91
HERPUD1-209ENST00000564678 TNP1P09430 55 aa3.1□□□□□ -1.91
HERPUD1-209ENST00000564678 MT1FP04733 61 aa3.09□□□□□ -1.91
HERPUD1-209ENST00000564678 KRTAP5-1Q6L8H4 278 aa3.07□□□□□ -1.92
HERPUD1-209ENST00000564678 KRTAP19-8Q3LI54 63 aa3.06□□□□□ -1.92
HERPUD1-209ENST00000564678 KRTAP5-2Q701N4 177 aa3.01□□□□□ -1.93
HERPUD1-209ENST00000564678 KRTAP10-12P60413 245 aa2.99□□□□□ -1.93
HERPUD1-209ENST00000564678 MT1BP07438 61 aa2.98□□□□□ -1.93
HERPUD1-209ENST00000564678 INE1O15225 51 aa2.93□□□□□ -1.94
HERPUD1-209ENST00000564678 KRTAP10-5P60370 271 aa2.93□□□□□ -1.94
HERPUD1-209ENST00000564678 MT1XP80297 61 aa2.93□□□□□ -1.94
HERPUD1-209ENST00000564678 KRTAP5-11Q6L8G4 156 aa2.91□□□□□ -1.94
HERPUD1-209ENST00000564678 LCE3AQ5TA76 89 aa2.89□□□□□ -1.95
HERPUD1-209ENST00000564678 KRTAP5-8O75690 187 aa2.88□□□□□ -1.95
HERPUD1-209ENST00000564678 LCE3EQ5T5B0 92 aa2.88□□□□□ -1.95
HERPUD1-209ENST00000564678 KRTAP8-1Q8IUC2 63 aa2.88□□□□□ -1.95
HERPUD1-209ENST00000564678 USH2AO75445 5202 aa2.86□□□□□ -1.95
HERPUD1-209ENST00000564678 SPRR5A0A1B0GTR4 108 aa2.84□□□□□ -1.96
HERPUD1-209ENST00000564678 KRTAP10-7P60409 375 aaPredicted RBP2.81□□□□□ -1.96
HERPUD1-209ENST00000564678 CRCT1Q9UGL9 99 aa2.8□□□□□ -1.96
HERPUD1-209ENST00000564678 KRTAP12-3P60328 96 aa2.79□□□□□ -1.96
HERPUD1-209ENST00000564678 FSIP2Q5CZC0 6907 aa2.79□□□□□ -1.96
HERPUD1-209ENST00000564678 LCE1EQ5T753 118 aa2.77□□□□□ -1.97
HERPUD1-209ENST00000564678 SSPOA2VEC9 5147 aa2.73□□□□□ -1.97
HERPUD1-209ENST00000564678 KRTAP19-5Q3LI72 72 aa2.68□□□□□ -1.98
HERPUD1-209ENST00000564678 KRTAP19-6Q3LI70 58 aa2.67□□□□□ -1.98
HERPUD1-209ENST00000564678 KMT2DO14686 5537 aa2.65□□□□□ -1.98
HERPUD1-209ENST00000564678 KRTAP19-7Q3SYF9 63 aa2.61□□□□□ -1.99
HERPUD1-209ENST00000564678 KRTAP6-3Q3LI67 103 aa2.6□□□□□ -1.99
HERPUD1-209ENST00000564678 LCE3DQ9BYE3 92 aa2.6□□□□□ -1.99
HERPUD1-209ENST00000564678 FCGBPQ9Y6R7 5405 aaPredicted RBP2.6□□□□□ -1.99
HERPUD1-209ENST00000564678 MT1EP04732 61 aa2.56□□□□□ -2
HERPUD1-209ENST00000564678 KRTAP4-3Q9BYR4 195 aa2.56□□□□□ -2
HERPUD1-209ENST00000564678 MT1LQ93083 61 aa2.53□□□□□ -2
HERPUD1-209ENST00000564678 MACF1Q9UPN3 7388 aaKnown RBP2.5□□□□□ -2.01
HERPUD1-209ENST00000564678 SYNE2Q8WXH0 6885 aaKnown RBP2.49□□□□□ -2.01
HERPUD1-209ENST00000564678 KRTAP9-6A8MVA2 160 aa2.46□□□□□ -2.02
HERPUD1-209ENST00000564678 MT1GP13640 62 aa2.44□□□□□ -2.02
HERPUD1-209ENST00000564678 KRTAP19-3Q7Z4W3 81 aa2.43□□□□□ -2.02
HERPUD1-209ENST00000564678 MUC12Q9UKN1 5478 aa2.43□□□□□ -2.02
HERPUD1-209ENST00000564678 MT1MQ8N339 61 aa2.4□□□□□ -2.03
HERPUD1-209ENST00000564678 KRTAP2-3P0C7H8 128 aa2.39□□□□□ -2.03
HERPUD1-209ENST00000564678 KRTAP2-4Q9BYR9 128 aa2.39□□□□□ -2.03
HERPUD1-209ENST00000564678 KRTAP2-1Q9BYU5 128 aa2.39□□□□□ -2.03
HERPUD1-209ENST00000564678 MDN1Q9NU22 5596 aa2.39□□□□□ -2.03
HERPUD1-209ENST00000564678 SPRR2FQ96RM1 72 aa2.37□□□□□ -2.03
HERPUD1-209ENST00000564678 OBSCNQ5VST9 7968 aa2.36□□□□□ -2.03
HERPUD1-209ENST00000564678 MUC5BQ9HC84 5762 aaPredicted RBP2.35□□□□□ -2.03
HERPUD1-209ENST00000564678 NEBP20929 6669 aa2.34□□□□□ -2.03
HERPUD1-209ENST00000564678 KRTAP12-4P60329 112 aa2.33□□□□□ -2.04
HERPUD1-209ENST00000564678 KRTAP20-1Q3LI63 56 aa2.28□□□□□ -2.04
HERPUD1-209ENST00000564678 SPRR2EP22531 72 aa2.25□□□□□ -2.05
HERPUD1-209ENST00000564678 SPRR2BP35325 72 aa2.25□□□□□ -2.05
HERPUD1-209ENST00000564678 SPRR2AP35326 72 aa2.25□□□□□ -2.05
HERPUD1-209ENST00000564678 DSTQ03001 7570 aaKnown RBP2.25□□□□□ -2.05
HERPUD1-209ENST00000564678 SPRR2DP22532 72 aa2.18□□□□□ -2.06
HERPUD1-209ENST00000564678 MT1AP04731 61 aa2.16□□□□□ -2.06
HERPUD1-209ENST00000564678 KRTAP5-5Q701N2 237 aaPredicted RBP2.15□□□□□ -2.07
HERPUD1-209ENST00000564678 KRTAP6-1Q3LI64 71 aa2.12□□□□□ -2.07
HERPUD1-209ENST00000564678 SYNE1Q8NF91 8797 aaKnown RBP2.06□□□□□ -2.08
HERPUD1-209ENST00000564678 GPR98Q8WXG9 6306 aa2.04□□□□□ -2.08
HERPUD1-209ENST00000564678 KRTAP6-2Q3LI66 62 aa1.92□□□□□ -2.1
HERPUD1-209ENST00000564678 MT4P47944 62 aa1.9□□□□□ -2.11
HERPUD1-209ENST00000564678 KRTAP20-2Q3LI61 65 aa1.82□□□□□ -2.12
HERPUD1-209ENST00000564678 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
HERPUD1-209ENST00000564678 PRM1P04553 51 aa1.79□□□□□ -2.12
HERPUD1-209ENST00000564678 KRTAP5-10Q6L8G5 202 aa1.75□□□□□ -2.13
HERPUD1-209ENST00000564678 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
HERPUD1-209ENST00000564678 LCE1BQ5T7P3 118 aa1.74□□□□□ -2.13
HERPUD1-209ENST00000564678 KRTAP5-7Q6L8G8 165 aa1.69□□□□□ -2.14
HERPUD1-209ENST00000564678 AHNAKQ09666 5890 aaKnown RBP1.59□□□□□ -2.15
HERPUD1-209ENST00000564678 MUC5ACP98088 5654 aa1.57□□□□□ -2.16
HERPUD1-209ENST00000564678 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
HERPUD1-209ENST00000564678 KRTAP21-2Q3LI59 83 aa1.4□□□□□ -2.19
HERPUD1-209ENST00000564678 PHGR1C9JFL3 82 aa1.15□□□□□ -2.23
HERPUD1-209ENST00000564678 KRTAP21-1Q3LI58 79 aa1.14□□□□□ -2.23
HERPUD1-209ENST00000564678 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 81.1 ms