RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
SMPD3-203ENST00000563226 KRTAP19-3Q7Z4W3 81 aa6.46□□□□□ -1.37
SMPD3-203ENST00000563226 CRCT1Q9UGL9 99 aa6.46□□□□□ -1.37
SMPD3-203ENST00000563226 SPRR2FQ96RM1 72 aa6.45□□□□□ -1.38
SMPD3-203ENST00000563226 KRTAP4-3Q9BYR4 195 aa6.43□□□□□ -1.38
SMPD3-203ENST00000563226 MT1MQ8N339 61 aa6.41□□□□□ -1.38
SMPD3-203ENST00000563226 MT1GP13640 62 aa6.39□□□□□ -1.39
SMPD3-203ENST00000563226 SYNE2Q8WXH0 6885 aaKnown RBP6.35□□□□□ -1.39
SMPD3-203ENST00000563226 LCE5AQ5TCM9 118 aa6.31□□□□□ -1.4
SMPD3-203ENST00000563226 LOC100996750A0A140TA64 210 aa6.29□□□□□ -1.4
SMPD3-203ENST00000563226 MDN1Q9NU22 5596 aa6.22□□□□□ -1.41
SMPD3-203ENST00000563226 KRTAP5-9P26371 169 aa6.19□□□□□ -1.42
SMPD3-203ENST00000563226 KRTAP9-6A0A140TA67 174 aa6.17□□□□□ -1.42
SMPD3-203ENST00000563226 KRTAP2-3P0C7H8 128 aa6.17□□□□□ -1.42
SMPD3-203ENST00000563226 KRTAP2-4Q9BYR9 128 aa6.17□□□□□ -1.42
SMPD3-203ENST00000563226 KRTAP2-1Q9BYU5 128 aa6.17□□□□□ -1.42
SMPD3-203ENST00000563226 DSTQ03001 7570 aaKnown RBP6.16□□□□□ -1.42
SMPD3-203ENST00000563226 LCE1AQ5T7P2 110 aa6.11□□□□□ -1.43
SMPD3-203ENST00000563226 INE1O15225 51 aa6.03□□□□□ -1.44
SMPD3-203ENST00000563226 SPRR2EP22531 72 aa6.01□□□□□ -1.45
SMPD3-203ENST00000563226 SPRR2BP35325 72 aa6.01□□□□□ -1.45
SMPD3-203ENST00000563226 SPRR2AP35326 72 aa6.01□□□□□ -1.45
SMPD3-203ENST00000563226 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.98□□□□□ -1.45
SMPD3-203ENST00000563226 KRTAP6-3Q3LI67 103 aa5.89□□□□□ -1.47
SMPD3-203ENST00000563226 SPRR2DP22532 72 aa5.76□□□□□ -1.49
SMPD3-203ENST00000563226 KRTAP5-5Q701N2 237 aaPredicted RBP5.73□□□□□ -1.49
SMPD3-203ENST00000563226 KRTAP6-1Q3LI64 71 aa5.73□□□□□ -1.49
SMPD3-203ENST00000563226 MT1AP04731 61 aa5.68□□□□□ -1.5
SMPD3-203ENST00000563226 LCE3BQ5TA77 95 aa5.67□□□□□ -1.5
SMPD3-203ENST00000563226 SYNE1Q8NF91 8797 aaKnown RBP5.54□□□□□ -1.52
SMPD3-203ENST00000563226 NEBP20929 6669 aa5.54□□□□□ -1.52
SMPD3-203ENST00000563226 KRTAP9-7A8MTY7 169 aa5.54□□□□□ -1.52
SMPD3-203ENST00000563226 KRTAP4-9Q9BYQ8 210 aa5.49□□□□□ -1.53
SMPD3-203ENST00000563226 KRTAP9-4Q9BYQ2 154 aa5.38□□□□□ -1.55
SMPD3-203ENST00000563226 KRTAP12-4P60329 112 aa5.33□□□□□ -1.56
SMPD3-203ENST00000563226 KRTAP5-4Q6L8H1 288 aa5.27□□□□□ -1.57
SMPD3-203ENST00000563226 KRTAP6-2Q3LI66 62 aa5.2□□□□□ -1.58
SMPD3-203ENST00000563226 LCE3DQ9BYE3 92 aa5.19□□□□□ -1.58
SMPD3-203ENST00000563226 MT3P25713 68 aa5.11□□□□□ -1.59
SMPD3-203ENST00000563226 LCE3EQ5T5B0 92 aa5.08□□□□□ -1.6
SMPD3-203ENST00000563226 KRTAP4-6Q9BYQ5 205 aa5.08□□□□□ -1.6
SMPD3-203ENST00000563226 MT4P47944 62 aa5.07□□□□□ -1.6
SMPD3-203ENST00000563226 LCE4AQ5TA78 99 aa5.03□□□□□ -1.6
SMPD3-203ENST00000563226 KRTAP2-2Q9BYT5 123 aa4.98□□□□□ -1.61
SMPD3-203ENST00000563226 KRTAP20-2Q3LI61 65 aa4.95□□□□□ -1.62
SMPD3-203ENST00000563226 HMCN1Q96RW7 5635 aa4.92□□□□□ -1.62
SMPD3-203ENST00000563226 OBSCNQ5VST9 7968 aa4.92□□□□□ -1.62
SMPD3-203ENST00000563226 KRTAP20-1Q3LI63 56 aa4.88□□□□□ -1.63
SMPD3-203ENST00000563226 LCE1DQ5T752 114 aa4.88□□□□□ -1.63
SMPD3-203ENST00000563226 KRTAP5-2Q701N4 177 aa4.84□□□□□ -1.63
SMPD3-203ENST00000563226 KRTAP5-3Q6L8H2 238 aa4.74□□□□□ -1.65
SMPD3-203ENST00000563226 PRM1P04553 51 aa4.67□□□□□ -1.66
SMPD3-203ENST00000563226 MUC5ACP98088 5654 aa4.31□□□□□ -1.72
SMPD3-203ENST00000563226 LCE1EQ5T753 118 aa4.3□□□□□ -1.72
SMPD3-203ENST00000563226 LCE1BQ5T7P3 118 aa4.18□□□□□ -1.74
SMPD3-203ENST00000563226 KRTAP4-11Q9BYQ6 195 aa4.18□□□□□ -1.74
SMPD3-203ENST00000563226 KRTAP5-1Q6L8H4 278 aa4.17□□□□□ -1.74
SMPD3-203ENST00000563226 AHNAK2Q8IVF2 5795 aa4.17□□□□□ -1.74
SMPD3-203ENST00000563226 KRTAP5-10Q6L8G5 202 aa4.12□□□□□ -1.75
SMPD3-203ENST00000563226 GPR98Q8WXG9 6306 aa4.11□□□□□ -1.75
SMPD3-203ENST00000563226 KRTAP4-2Q9BYR5 136 aa4.1□□□□□ -1.75
SMPD3-203ENST00000563226 LCE1CQ5T751 118 aa4.04□□□□□ -1.76
SMPD3-203ENST00000563226 KRTAP5-8O75690 187 aa4.04□□□□□ -1.76
SMPD3-203ENST00000563226 KRTAP5-7Q6L8G8 165 aa3.91□□□□□ -1.78
SMPD3-203ENST00000563226 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.8□□□□□ -1.8
SMPD3-203ENST00000563226 KRTAP21-2Q3LI59 83 aa3.72□□□□□ -1.81
SMPD3-203ENST00000563226 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
SMPD3-203ENST00000563226 KRTAP5-11Q6L8G4 156 aa3.54□□□□□ -1.84
SMPD3-203ENST00000563226 KRTAP9-9Q9BYP9 154 aa3.49□□□□□ -1.85
SMPD3-203ENST00000563226 KRTAP4-12Q9BQ66 201 aa3.4□□□□□ -1.87
SMPD3-203ENST00000563226 KRTAP4-4Q9BYR3 166 aa3.39□□□□□ -1.87
SMPD3-203ENST00000563226 AHNAKQ09666 5890 aaKnown RBP3.16□□□□□ -1.9
SMPD3-203ENST00000563226 PHGR1C9JFL3 82 aa3.06□□□□□ -1.92
SMPD3-203ENST00000563226 LCE1FQ5T754 118 aa3.02□□□□□ -1.93
SMPD3-203ENST00000563226 MUC19Q7Z5P9 8384 aa2.95□□□□□ -1.94
SMPD3-203ENST00000563226 KRTAP21-1Q3LI58 79 aa2.88□□□□□ -1.95
SMPD3-203ENST00000563226 MUC16Q8WXI7 14507 aa1.98□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 84.9 ms