RNA–Protein interactions for RNA: ENST00000562836.5

CDH1-205, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 2,759 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-205ENST00000562836 MT2AP02795 61 aa3.01□□□□□ -1.93
CDH1-205ENST00000562836 MT1FP04733 61 aa3.01□□□□□ -1.93
CDH1-205ENST00000562836 MT1XP80297 61 aa2.99□□□□□ -1.93
CDH1-205ENST00000562836 KRTAP9-3Q9BYQ3 159 aa2.99□□□□□ -1.93
CDH1-205ENST00000562836 KRTAP9-8Q9BYQ0 159 aa2.98□□□□□ -1.93
CDH1-205ENST00000562836 MT1BP07438 61 aa2.97□□□□□ -1.93
CDH1-205ENST00000562836 USH2AO75445 5202 aa2.94□□□□□ -1.94
CDH1-205ENST00000562836 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
CDH1-205ENST00000562836 KRTAP19-5Q3LI72 72 aa2.9□□□□□ -1.95
CDH1-205ENST00000562836 KRTAP9-2Q9BYQ4 174 aa2.89□□□□□ -1.95
CDH1-205ENST00000562836 SYNE1Q8NF91 8797 aaKnown RBP2.86□□□□□ -1.95
CDH1-205ENST00000562836 KRTAP4-7Q9BYR0 210 aa2.83□□□□□ -1.96
CDH1-205ENST00000562836 FSIP2Q5CZC0 6907 aa2.83□□□□□ -1.96
CDH1-205ENST00000562836 KRTAP5-5Q701N2 237 aaPredicted RBP2.79□□□□□ -1.96
CDH1-205ENST00000562836 KMT2DO14686 5537 aa2.79□□□□□ -1.96
CDH1-205ENST00000562836 OBSCNQ5VST9 7968 aa2.79□□□□□ -1.96
CDH1-205ENST00000562836 KRTAP4-9Q9BYQ8 210 aa2.7□□□□□ -1.98
CDH1-205ENST00000562836 SSPOA2VEC9 5147 aa2.69□□□□□ -1.98
CDH1-205ENST00000562836 KRTAP19-7Q3SYF9 63 aa2.67□□□□□ -1.98
CDH1-205ENST00000562836 KRTAP4-8A0A0G2JLE6 195 aa2.66□□□□□ -1.98
CDH1-205ENST00000562836 KRTAP4-8Q9BYQ9 185 aa2.66□□□□□ -1.98
CDH1-205ENST00000562836 MT1LQ93083 61 aa2.61□□□□□ -1.99
CDH1-205ENST00000562836 MUC19Q7Z5P9 8384 aa2.6□□□□□ -1.99
CDH1-205ENST00000562836 KRTAP6-2Q3LI66 62 aa2.59□□□□□ -2
CDH1-205ENST00000562836 LOC100996750A0A140TA64 210 aa2.58□□□□□ -2
CDH1-205ENST00000562836 MT1EP04732 61 aa2.58□□□□□ -2
CDH1-205ENST00000562836 LCE3BQ5TA77 95 aa2.53□□□□□ -2
CDH1-205ENST00000562836 FCGBPQ9Y6R7 5405 aaPredicted RBP2.53□□□□□ -2
CDH1-205ENST00000562836 CRCT1Q9UGL9 99 aa2.5□□□□□ -2.01
CDH1-205ENST00000562836 MUC12Q9UKN1 5478 aa2.49□□□□□ -2.01
CDH1-205ENST00000562836 KRTAP19-6Q3LI70 58 aa2.49□□□□□ -2.01
CDH1-205ENST00000562836 MT1AP04731 61 aa2.48□□□□□ -2.01
CDH1-205ENST00000562836 MACF1Q9UPN3 7388 aaKnown RBP2.46□□□□□ -2.01
CDH1-205ENST00000562836 SYNE2Q8WXH0 6885 aaKnown RBP2.45□□□□□ -2.02
CDH1-205ENST00000562836 MT1GP13640 62 aa2.44□□□□□ -2.02
CDH1-205ENST00000562836 DSTQ03001 7570 aaKnown RBP2.4□□□□□ -2.03
CDH1-205ENST00000562836 KRTAP4-3Q9BYR4 195 aa2.4□□□□□ -2.03
CDH1-205ENST00000562836 MT1MQ8N339 61 aa2.39□□□□□ -2.03
CDH1-205ENST00000562836 KRTAP19-3Q7Z4W3 81 aa2.38□□□□□ -2.03
CDH1-205ENST00000562836 MDN1Q9NU22 5596 aa2.35□□□□□ -2.03
CDH1-205ENST00000562836 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
CDH1-205ENST00000562836 LCE1BQ5T7P3 118 aa2.33□□□□□ -2.04
CDH1-205ENST00000562836 KRTAP4-6Q9BYQ5 205 aa2.32□□□□□ -2.04
CDH1-205ENST00000562836 SPRR2FQ96RM1 72 aa2.31□□□□□ -2.04
CDH1-205ENST00000562836 KRTAP4-12Q9BQ66 201 aa2.31□□□□□ -2.04
CDH1-205ENST00000562836 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.27□□□□□ -2.05
CDH1-205ENST00000562836 KRTAP4-11Q9BYQ6 195 aa2.23□□□□□ -2.05
CDH1-205ENST00000562836 SPRR2DP22532 72 aa2.2□□□□□ -2.06
CDH1-205ENST00000562836 KRTAP6-1Q3LI64 71 aa2.2□□□□□ -2.06
CDH1-205ENST00000562836 KRTAP5-9P26371 169 aa2.15□□□□□ -2.07
CDH1-205ENST00000562836 SPRR2EP22531 72 aa2.14□□□□□ -2.07
CDH1-205ENST00000562836 SPRR2BP35325 72 aa2.14□□□□□ -2.07
CDH1-205ENST00000562836 SPRR2AP35326 72 aa2.14□□□□□ -2.07
CDH1-205ENST00000562836 GPR98Q8WXG9 6306 aa2.01□□□□□ -2.09
CDH1-205ENST00000562836 NEBP20929 6669 aa2.01□□□□□ -2.09
CDH1-205ENST00000562836 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
CDH1-205ENST00000562836 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
CDH1-205ENST00000562836 KRTAP4-2Q9BYR5 136 aa1.86□□□□□ -2.11
CDH1-205ENST00000562836 MT4P47944 62 aa1.84□□□□□ -2.11
CDH1-205ENST00000562836 KRTAP20-1Q3LI63 56 aa1.83□□□□□ -2.12
CDH1-205ENST00000562836 KRTAP5-4Q6L8H1 288 aa1.81□□□□□ -2.12
CDH1-205ENST00000562836 HMCN1Q96RW7 5635 aa1.81□□□□□ -2.12
CDH1-205ENST00000562836 KRTAP5-10Q6L8G5 202 aa1.75□□□□□ -2.13
CDH1-205ENST00000562836 KRTAP5-3Q6L8H2 238 aa1.75□□□□□ -2.13
CDH1-205ENST00000562836 KRTAP20-2Q3LI61 65 aa1.73□□□□□ -2.13
CDH1-205ENST00000562836 MUC5ACP98088 5654 aa1.71□□□□□ -2.14
CDH1-205ENST00000562836 MUC5BQ9HC84 5762 aaPredicted RBP1.66□□□□□ -2.14
CDH1-205ENST00000562836 KRTAP5-1Q6L8H4 278 aa1.6□□□□□ -2.15
CDH1-205ENST00000562836 AHNAKQ09666 5890 aaKnown RBP1.6□□□□□ -2.15
CDH1-205ENST00000562836 AHNAK2Q8IVF2 5795 aa1.57□□□□□ -2.16
CDH1-205ENST00000562836 KRTAP5-7Q6L8G8 165 aa1.56□□□□□ -2.16
CDH1-205ENST00000562836 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.44□□□□□ -2.18
CDH1-205ENST00000562836 KRTAP21-2Q3LI59 83 aa1.43□□□□□ -2.18
CDH1-205ENST00000562836 KRTAP5-8O75690 187 aa1.42□□□□□ -2.18
CDH1-205ENST00000562836 KRTAP4-4Q9BYR3 166 aa1.36□□□□□ -2.19
CDH1-205ENST00000562836 KRTAP5-11Q6L8G4 156 aa1.36□□□□□ -2.19
CDH1-205ENST00000562836 PHGR1C9JFL3 82 aa1.08□□□□□ -2.24
CDH1-205ENST00000562836 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 56.4 ms