RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 MUC12Q9UKN1 5478 aa4.8□□□□□ -1.64
GTF3C1-203ENST00000562609 KRTAP9-2Q9BYQ4 174 aa4.75□□□□□ -1.65
GTF3C1-203ENST00000562609 MT1EP04732 61 aa4.72□□□□□ -1.65
GTF3C1-203ENST00000562609 MACF1Q9UPN3 7388 aaKnown RBP4.71□□□□□ -1.65
GTF3C1-203ENST00000562609 MT1LQ93083 61 aa4.68□□□□□ -1.66
GTF3C1-203ENST00000562609 DSTQ03001 7570 aaKnown RBP4.66□□□□□ -1.66
GTF3C1-203ENST00000562609 SYNE2Q8WXH0 6885 aaKnown RBP4.65□□□□□ -1.67
GTF3C1-203ENST00000562609 KRTAP12-4P60329 112 aa4.64□□□□□ -1.67
GTF3C1-203ENST00000562609 KRTAP9-6A0A140TA67 174 aa4.59□□□□□ -1.67
GTF3C1-203ENST00000562609 KRTAP4-3Q9BYR4 195 aa4.57□□□□□ -1.68
GTF3C1-203ENST00000562609 SPRR2FQ96RM1 72 aa4.5□□□□□ -1.69
GTF3C1-203ENST00000562609 LOC100996750A0A140TA64 210 aa4.49□□□□□ -1.69
GTF3C1-203ENST00000562609 KRTAP19-4Q3LI73 84 aa4.47□□□□□ -1.69
GTF3C1-203ENST00000562609 MDN1Q9NU22 5596 aa4.47□□□□□ -1.69
GTF3C1-203ENST00000562609 CRCT1Q9UGL9 99 aa4.46□□□□□ -1.69
GTF3C1-203ENST00000562609 KRTAP19-3Q7Z4W3 81 aa4.46□□□□□ -1.7
GTF3C1-203ENST00000562609 MT1GP13640 62 aa4.44□□□□□ -1.7
GTF3C1-203ENST00000562609 MT1MQ8N339 61 aa4.44□□□□□ -1.7
GTF3C1-203ENST00000562609 LCE5AQ5TCM9 118 aa4.34□□□□□ -1.72
GTF3C1-203ENST00000562609 SYNE1Q8NF91 8797 aaKnown RBP4.27□□□□□ -1.73
GTF3C1-203ENST00000562609 KRTAP4-9Q9BYQ8 210 aa4.22□□□□□ -1.73
GTF3C1-203ENST00000562609 LCE1AQ5T7P2 110 aa4.19□□□□□ -1.74
GTF3C1-203ENST00000562609 PRM1P04553 51 aa4.18□□□□□ -1.74
GTF3C1-203ENST00000562609 KRTAP9-7A8MTY7 169 aa4.17□□□□□ -1.74
GTF3C1-203ENST00000562609 LCE3BQ5TA77 95 aa4.17□□□□□ -1.74
GTF3C1-203ENST00000562609 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.17□□□□□ -1.74
GTF3C1-203ENST00000562609 KRTAP5-9P26371 169 aa4.17□□□□□ -1.74
GTF3C1-203ENST00000562609 SPRR2EP22531 72 aa4.14□□□□□ -1.75
GTF3C1-203ENST00000562609 SPRR2BP35325 72 aa4.14□□□□□ -1.75
GTF3C1-203ENST00000562609 SPRR2AP35326 72 aa4.14□□□□□ -1.75
GTF3C1-203ENST00000562609 KRTAP6-3Q3LI67 103 aa4.09□□□□□ -1.75
GTF3C1-203ENST00000562609 KRTAP5-5Q701N2 237 aaPredicted RBP4.08□□□□□ -1.76
GTF3C1-203ENST00000562609 LCE3DQ9BYE3 92 aa4.05□□□□□ -1.76
GTF3C1-203ENST00000562609 LCE3EQ5T5B0 92 aa4.04□□□□□ -1.76
GTF3C1-203ENST00000562609 MT1AP04731 61 aa4.04□□□□□ -1.76
GTF3C1-203ENST00000562609 OBSCNQ5VST9 7968 aa4.02□□□□□ -1.77
GTF3C1-203ENST00000562609 KRTAP6-1Q3LI64 71 aa4.01□□□□□ -1.77
GTF3C1-203ENST00000562609 KRTAP2-2Q9BYT5 123 aa3.98□□□□□ -1.77
GTF3C1-203ENST00000562609 SPRR2DP22532 72 aa3.96□□□□□ -1.78
GTF3C1-203ENST00000562609 KRTAP6-2Q3LI66 62 aa3.85□□□□□ -1.79
GTF3C1-203ENST00000562609 NEBP20929 6669 aa3.8□□□□□ -1.8
GTF3C1-203ENST00000562609 LCE1EQ5T753 118 aa3.72□□□□□ -1.81
GTF3C1-203ENST00000562609 KRTAP9-4Q9BYQ2 154 aa3.71□□□□□ -1.82
GTF3C1-203ENST00000562609 KRTAP20-1Q3LI63 56 aa3.6□□□□□ -1.83
GTF3C1-203ENST00000562609 LCE1DQ5T752 114 aa3.57□□□□□ -1.84
GTF3C1-203ENST00000562609 MT4P47944 62 aa3.56□□□□□ -1.84
GTF3C1-203ENST00000562609 KRTAP4-6Q9BYQ5 205 aa3.55□□□□□ -1.84
GTF3C1-203ENST00000562609 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
GTF3C1-203ENST00000562609 MT3P25713 68 aa3.53□□□□□ -1.84
GTF3C1-203ENST00000562609 HMCN1Q96RW7 5635 aa3.46□□□□□ -1.86
GTF3C1-203ENST00000562609 KRTAP20-2Q3LI61 65 aa3.38□□□□□ -1.87
GTF3C1-203ENST00000562609 LCE4AQ5TA78 99 aa3.35□□□□□ -1.87
GTF3C1-203ENST00000562609 KRTAP5-2Q701N4 177 aa3.25□□□□□ -1.89
GTF3C1-203ENST00000562609 KRTAP5-3Q6L8H2 238 aa3.2□□□□□ -1.9
GTF3C1-203ENST00000562609 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
GTF3C1-203ENST00000562609 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
GTF3C1-203ENST00000562609 MUC5ACP98088 5654 aa3.05□□□□□ -1.92
GTF3C1-203ENST00000562609 LCE1FQ5T754 118 aa3.04□□□□□ -1.92
GTF3C1-203ENST00000562609 LCE1BQ5T7P3 118 aa2.99□□□□□ -1.93
GTF3C1-203ENST00000562609 AHNAK2Q8IVF2 5795 aa2.9□□□□□ -1.94
GTF3C1-203ENST00000562609 KRTAP5-10Q6L8G5 202 aa2.87□□□□□ -1.95
GTF3C1-203ENST00000562609 KRTAP4-12Q9BQ66 201 aa2.87□□□□□ -1.95
GTF3C1-203ENST00000562609 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
GTF3C1-203ENST00000562609 KRTAP4-2Q9BYR5 136 aa2.82□□□□□ -1.96
GTF3C1-203ENST00000562609 MUC19Q7Z5P9 8384 aa2.78□□□□□ -1.96
GTF3C1-203ENST00000562609 LCE1CQ5T751 118 aa2.75□□□□□ -1.97
GTF3C1-203ENST00000562609 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
GTF3C1-203ENST00000562609 KRTAP9-9Q9BYP9 154 aa2.71□□□□□ -1.98
GTF3C1-203ENST00000562609 KRTAP5-7Q6L8G8 165 aa2.69□□□□□ -1.98
GTF3C1-203ENST00000562609 KRTAP21-1Q3LI58 79 aa2.64□□□□□ -1.99
GTF3C1-203ENST00000562609 MUC5BQ9HC84 5762 aaPredicted RBP2.63□□□□□ -1.99
GTF3C1-203ENST00000562609 KRTAP21-2Q3LI59 83 aa2.58□□□□□ -2
GTF3C1-203ENST00000562609 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.54□□□□□ -2
GTF3C1-203ENST00000562609 KRTAP4-4Q9BYR3 166 aa2.47□□□□□ -2.01
GTF3C1-203ENST00000562609 KRTAP5-11Q6L8G4 156 aa2.38□□□□□ -2.03
GTF3C1-203ENST00000562609 AHNAKQ09666 5890 aaKnown RBP2.37□□□□□ -2.03
GTF3C1-203ENST00000562609 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
GTF3C1-203ENST00000562609 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 81.2 ms