RNA–Protein interactions for RNA: ENST00000559193.5

SPG11-215, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 2,579 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-215ENST00000559193 KRTAP19-6Q3LI70 58 aa5.58□□□□□ -1.52
SPG11-215ENST00000559193 KRTAP4-3Q9BYR4 195 aa5.44□□□□□ -1.54
SPG11-215ENST00000559193 LOC100996750A0A140TA64 210 aa5.42□□□□□ -1.54
SPG11-215ENST00000559193 MT1GP13640 62 aa5.36□□□□□ -1.55
SPG11-215ENST00000559193 FCGBPQ9Y6R7 5405 aaPredicted RBP5.35□□□□□ -1.55
SPG11-215ENST00000559193 MT1MQ8N339 61 aa5.35□□□□□ -1.55
SPG11-215ENST00000559193 KRTAP19-3Q7Z4W3 81 aa5.33□□□□□ -1.56
SPG11-215ENST00000559193 MUC12Q9UKN1 5478 aa5.33□□□□□ -1.56
SPG11-215ENST00000559193 DSTQ03001 7570 aaKnown RBP5.3□□□□□ -1.56
SPG11-215ENST00000559193 CRCT1Q9UGL9 99 aa5.22□□□□□ -1.57
SPG11-215ENST00000559193 LCE5AQ5TCM9 118 aa5.15□□□□□ -1.59
SPG11-215ENST00000559193 SPRR2FQ96RM1 72 aa5.1□□□□□ -1.59
SPG11-215ENST00000559193 KRTAP12-4P60329 112 aa5.03□□□□□ -1.6
SPG11-215ENST00000559193 MACF1Q9UPN3 7388 aaKnown RBP4.97□□□□□ -1.61
SPG11-215ENST00000559193 SYNE1Q8NF91 8797 aaKnown RBP4.97□□□□□ -1.61
SPG11-215ENST00000559193 LCE3BQ5TA77 95 aa4.97□□□□□ -1.61
SPG11-215ENST00000559193 KRTAP4-6Q9BYQ5 205 aa4.92□□□□□ -1.62
SPG11-215ENST00000559193 KRTAP4-9Q9BYQ8 210 aa4.88□□□□□ -1.63
SPG11-215ENST00000559193 KRTAP6-1Q3LI64 71 aa4.87□□□□□ -1.63
SPG11-215ENST00000559193 SYNE2Q8WXH0 6885 aaKnown RBP4.87□□□□□ -1.63
SPG11-215ENST00000559193 MT1AP04731 61 aa4.82□□□□□ -1.64
SPG11-215ENST00000559193 KRTAP9-2Q9BYQ4 174 aa4.82□□□□□ -1.64
SPG11-215ENST00000559193 LCE1AQ5T7P2 110 aa4.77□□□□□ -1.65
SPG11-215ENST00000559193 MDN1Q9NU22 5596 aa4.77□□□□□ -1.65
SPG11-215ENST00000559193 OBSCNQ5VST9 7968 aa4.74□□□□□ -1.65
SPG11-215ENST00000559193 KRTAP5-5Q701N2 237 aaPredicted RBP4.73□□□□□ -1.65
SPG11-215ENST00000559193 KRTAP5-9P26371 169 aa4.72□□□□□ -1.65
SPG11-215ENST00000559193 LCE3DQ9BYE3 92 aa4.68□□□□□ -1.66
SPG11-215ENST00000559193 LCE3EQ5T5B0 92 aa4.62□□□□□ -1.67
SPG11-215ENST00000559193 SPRR2EP22531 72 aa4.61□□□□□ -1.67
SPG11-215ENST00000559193 SPRR2BP35325 72 aa4.61□□□□□ -1.67
SPG11-215ENST00000559193 SPRR2AP35326 72 aa4.61□□□□□ -1.67
SPG11-215ENST00000559193 KRTAP9-7A8MTY7 169 aa4.53□□□□□ -1.68
SPG11-215ENST00000559193 KRTAP9-4Q9BYQ2 154 aa4.52□□□□□ -1.69
SPG11-215ENST00000559193 PRM1P04553 51 aa4.47□□□□□ -1.69
SPG11-215ENST00000559193 SPRR2DP22532 72 aa4.41□□□□□ -1.7
SPG11-215ENST00000559193 KRTAP6-2Q3LI66 62 aa4.35□□□□□ -1.71
SPG11-215ENST00000559193 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.34□□□□□ -1.71
SPG11-215ENST00000559193 KRTAP6-3Q3LI67 103 aa4.32□□□□□ -1.72
SPG11-215ENST00000559193 MT3P25713 68 aa4.3□□□□□ -1.72
SPG11-215ENST00000559193 KRTAP9-6A0A140TA67 174 aa4.25□□□□□ -1.73
SPG11-215ENST00000559193 KRTAP5-4Q6L8H1 288 aa4.12□□□□□ -1.75
SPG11-215ENST00000559193 KRTAP9-9Q9BYP9 154 aa4.05□□□□□ -1.76
SPG11-215ENST00000559193 NEBP20929 6669 aa4.04□□□□□ -1.76
SPG11-215ENST00000559193 KRTAP4-12Q9BQ66 201 aa4.01□□□□□ -1.77
SPG11-215ENST00000559193 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
SPG11-215ENST00000559193 MT4P47944 62 aa3.9□□□□□ -1.79
SPG11-215ENST00000559193 KRTAP5-2Q701N4 177 aa3.88□□□□□ -1.79
SPG11-215ENST00000559193 KRTAP20-2Q3LI61 65 aa3.87□□□□□ -1.79
SPG11-215ENST00000559193 LCE1DQ5T752 114 aa3.87□□□□□ -1.79
SPG11-215ENST00000559193 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
SPG11-215ENST00000559193 KRTAP4-2Q9BYR5 136 aa3.8□□□□□ -1.8
SPG11-215ENST00000559193 HMCN1Q96RW7 5635 aa3.7□□□□□ -1.82
SPG11-215ENST00000559193 KRTAP5-3Q6L8H2 238 aa3.68□□□□□ -1.82
SPG11-215ENST00000559193 MUC5ACP98088 5654 aa3.64□□□□□ -1.83
SPG11-215ENST00000559193 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
SPG11-215ENST00000559193 KRTAP4-11Q9BYQ6 195 aa3.59□□□□□ -1.83
SPG11-215ENST00000559193 LCE1EQ5T753 118 aa3.5□□□□□ -1.85
SPG11-215ENST00000559193 LCE1BQ5T7P3 118 aa3.46□□□□□ -1.86
SPG11-215ENST00000559193 KRTAP5-10Q6L8G5 202 aa3.45□□□□□ -1.86
SPG11-215ENST00000559193 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.86
SPG11-215ENST00000559193 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
SPG11-215ENST00000559193 KRTAP21-2Q3LI59 83 aa3.15□□□□□ -1.91
SPG11-215ENST00000559193 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.14□□□□□ -1.91
SPG11-215ENST00000559193 KRTAP5-8O75690 187 aa3.04□□□□□ -1.92
SPG11-215ENST00000559193 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
SPG11-215ENST00000559193 KRTAP5-7Q6L8G8 165 aa3.01□□□□□ -1.93
SPG11-215ENST00000559193 GPR98Q8WXG9 6306 aa2.97□□□□□ -1.93
SPG11-215ENST00000559193 AHNAK2Q8IVF2 5795 aa2.94□□□□□ -1.94
SPG11-215ENST00000559193 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
SPG11-215ENST00000559193 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
SPG11-215ENST00000559193 KRTAP21-1Q3LI58 79 aa2.82□□□□□ -1.96
SPG11-215ENST00000559193 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.97
SPG11-215ENST00000559193 PHGR1C9JFL3 82 aa2.46□□□□□ -2.02
SPG11-215ENST00000559193 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
SPG11-215ENST00000559193 AHNAKQ09666 5890 aaKnown RBP2.28□□□□□ -2.05
SPG11-215ENST00000559193 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 63.9 ms