RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 SPRR2DP22532 72 aa7.67□□□□□ -1.18
CASC4-204ENST00000557945 LCE5AQ5TCM9 118 aa7.6□□□□□ -1.19
CASC4-204ENST00000557945 PP632Q6XCG6 107 aa7.6□□□□□ -1.19
CASC4-204ENST00000557945 MT1LQ93083 61 aa7.59□□□□□ -1.19
CASC4-204ENST00000557945 PMAIP1Q13794 54 aa7.57□□□□□ -1.2
CASC4-204ENST00000557945 KRTAP20-1Q3LI63 56 aa7.57□□□□□ -1.2
CASC4-204ENST00000557945 MT1GP13640 62 aa7.55□□□□□ -1.2
CASC4-204ENST00000557945 KRTAP2-3P0C7H8 128 aa7.5□□□□□ -1.21
CASC4-204ENST00000557945 KRTAP2-4Q9BYR9 128 aa7.5□□□□□ -1.21
CASC4-204ENST00000557945 PRO0628Q9UI54 55 aa7.47□□□□□ -1.21
CASC4-204ENST00000557945 MT1MQ8N339 61 aa7.44□□□□□ -1.22
CASC4-204ENST00000557945 LCE3BQ5TA77 95 aa7.4□□□□□ -1.22
CASC4-204ENST00000557945 KRTAP15-1Q3LI76 137 aa7.38□□□□□ -1.23
CASC4-204ENST00000557945 KRTAP2-2Q9BYT5 123 aa7.3□□□□□ -1.24
CASC4-204ENST00000557945 KRTAP2-1Q9BYU5 128 aa7.3□□□□□ -1.24
CASC4-204ENST00000557945 KRTAP4-7Q9BYR0 210 aa7.28□□□□□ -1.24
CASC4-204ENST00000557945 KRTAP4-3Q9BYR4 195 aa7.28□□□□□ -1.24
CASC4-204ENST00000557945 DSTQ03001 7570 aaKnown RBP7.24□□□□□ -1.25
CASC4-204ENST00000557945 KRTAP19-4Q3LI73 84 aa7.23□□□□□ -1.25
CASC4-204ENST00000557945 LOC100996750A0A140TA64 210 aa7.18□□□□□ -1.26
CASC4-204ENST00000557945 KRTAP4-6Q9BYQ5 205 aa7.18□□□□□ -1.26
CASC4-204ENST00000557945 PRAC1Q96KF2 57 aa7.17□□□□□ -1.26
CASC4-204ENST00000557945 LCE3CQ5T5A8 94 aa7.15□□□□□ -1.26
CASC4-204ENST00000557945 KTN1-AS1Q86SY8 53 aa7.02□□□□□ -1.29
CASC4-204ENST00000557945 LCE4AQ5TA78 99 aa6.78□□□□□ -1.32
CASC4-204ENST00000557945 KRTAP4-9Q9BYQ8 210 aa6.75□□□□□ -1.33
CASC4-204ENST00000557945 KRTAP5-4Q6L8H1 288 aa6.73□□□□□ -1.33
CASC4-204ENST00000557945 KRTAP5-5Q701N2 237 aaPredicted RBP6.73□□□□□ -1.33
CASC4-204ENST00000557945 KRTAP9-6A8MVA2 160 aa6.71□□□□□ -1.33
CASC4-204ENST00000557945 SVIPQ8NHG7 77 aa6.71□□□□□ -1.33
CASC4-204ENST00000557945 MT4P47944 62 aa6.68□□□□□ -1.34
CASC4-204ENST00000557945 LCE1DQ5T752 114 aa6.64□□□□□ -1.35
CASC4-204ENST00000557945 MT1AP04731 61 aa6.47□□□□□ -1.37
CASC4-204ENST00000557945 KRTAP12-4P60329 112 aa6.47□□□□□ -1.37
CASC4-204ENST00000557945 HMCN1Q96RW7 5635 aa6.47□□□□□ -1.37
CASC4-204ENST00000557945 SPRR5A0A1B0GTR4 108 aa6.43□□□□□ -1.38
CASC4-204ENST00000557945 KRTAP6-1Q3LI64 71 aa6.41□□□□□ -1.38
CASC4-204ENST00000557945 SYNE1Q8NF91 8797 aaKnown RBP6.36□□□□□ -1.39
CASC4-204ENST00000557945 KRTAP20-2Q3LI61 65 aa6.34□□□□□ -1.39
CASC4-204ENST00000557945 KRTAP4-12Q9BQ66 201 aa6.23□□□□□ -1.41
CASC4-204ENST00000557945 GPR98Q8WXG9 6306 aa6.23□□□□□ -1.41
CASC4-204ENST00000557945 KRTAP9-4Q9BYQ2 154 aa6.2□□□□□ -1.42
CASC4-204ENST00000557945 KRTAP5-3Q6L8H2 238 aa6.12□□□□□ -1.43
CASC4-204ENST00000557945 KRTAP9-9Q9BYP9 154 aa6.08□□□□□ -1.44
CASC4-204ENST00000557945 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
CASC4-204ENST00000557945 KRTAP6-2Q3LI66 62 aa6.03□□□□□ -1.44
CASC4-204ENST00000557945 KRTAP5-2Q701N4 177 aa5.99□□□□□ -1.45
CASC4-204ENST00000557945 LUZP6Q538Z0 58 aa5.97□□□□□ -1.45
CASC4-204ENST00000557945 MT3P25713 68 aa5.91□□□□□ -1.46
CASC4-204ENST00000557945 KRTAP5-10Q6L8G5 202 aa5.85□□□□□ -1.47
CASC4-204ENST00000557945 KRTAP4-11Q9BYQ6 195 aa5.66□□□□□ -1.5
CASC4-204ENST00000557945 KRTAP4-2Q9BYR5 136 aa5.56□□□□□ -1.52
CASC4-204ENST00000557945 KRTAP5-7Q6L8G8 165 aa5.55□□□□□ -1.52
CASC4-204ENST00000557945 OBSCNQ5VST9 7968 aa5.52□□□□□ -1.53
CASC4-204ENST00000557945 KRTAP5-8O75690 187 aa5.44□□□□□ -1.54
CASC4-204ENST00000557945 NDUFAF8A1L188 74 aa5.34□□□□□ -1.55
CASC4-204ENST00000557945 KRTAP5-1Q6L8H4 278 aa5.28□□□□□ -1.56
CASC4-204ENST00000557945 LCE3DQ9BYE3 92 aa5.27□□□□□ -1.57
CASC4-204ENST00000557945 LCE1EQ5T753 118 aa5.26□□□□□ -1.57
CASC4-204ENST00000557945 MUC5ACP98088 5654 aa5.14□□□□□ -1.59
CASC4-204ENST00000557945 LCE3EQ5T5B0 92 aa5.05□□□□□ -1.6
CASC4-204ENST00000557945 LCE1BQ5T7P3 118 aa4.98□□□□□ -1.61
CASC4-204ENST00000557945 H3BS24 57 aa4.92□□□□□ -1.62
CASC4-204ENST00000557945 MUC5BQ9HC84 5762 aaPredicted RBP4.91□□□□□ -1.62
CASC4-204ENST00000557945 LCE1CQ5T751 118 aa4.88□□□□□ -1.63
CASC4-204ENST00000557945 AHNAKQ09666 5890 aaKnown RBP4.85□□□□□ -1.63
CASC4-204ENST00000557945 A0A0A0MQY5 61 aa4.52□□□□□ -1.69
CASC4-204ENST00000557945 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.49□□□□□ -1.69
CASC4-204ENST00000557945 INE1O15225 51 aa4.37□□□□□ -1.71
CASC4-204ENST00000557945 KRTAP5-11Q6L8G4 156 aa4.37□□□□□ -1.71
CASC4-204ENST00000557945 KRTAP21-2Q3LI59 83 aa4.19□□□□□ -1.74
CASC4-204ENST00000557945 PRM1P04553 51 aa4.12□□□□□ -1.75
CASC4-204ENST00000557945 LCE1FQ5T754 118 aa4.11□□□□□ -1.75
CASC4-204ENST00000557945 KRTAP4-4Q9BYR3 166 aa3.81□□□□□ -1.8
CASC4-204ENST00000557945 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
CASC4-204ENST00000557945 MUC19Q7Z5P9 8384 aa3.35□□□□□ -1.87
CASC4-204ENST00000557945 KRTAP21-1Q3LI58 79 aa2.57□□□□□ -2
CASC4-204ENST00000557945 MUC16Q8WXI7 14507 aa2.38□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 12 ms